View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9875_low_12 (Length: 274)
Name: NF9875_low_12
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 33103531 - 33103811
Alignment:
| Q |
1 |
cgtactccagcctcattggtctaatttggtctcttgtggcatttaggtaaattaaagtcaaaatcatatttaattgaccgcaaaatcgattactttaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33103531 |
cgtactccagcctcattggtctaatttggtctcttgtggcatttaggtaaattaaagtcaaaatcataattaattgaccgcaaaatcgattactttaagt |
33103630 |
T |
|
| Q |
101 |
tgct--------tttttgactttttg---------------acttctactagtgattcctgtagagtttttatataagtttggtttgatgattattaatt |
177 |
Q |
| |
|
|||| |||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33103631 |
tgcttttttgactttttgacttctagcagtaactgtttactactactactagtgattcctgtagagtttttatataagtttggttttatgattattaatt |
33103730 |
T |
|
| Q |
178 |
ttgattgtaggtggcatgtgcatatgcctaaaataatagagaaatcaatctccatactgtctgatgctggtcttggaatgg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33103731 |
ttgattgtaggtggcatgtgcatatgcctaaaataatagagaaatcaatctccatactgtctgatgctggtcttggaatgg |
33103811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 52717971 - 52718004
Alignment:
| Q |
225 |
atctccatactgtctgatgctggtcttggaatgg |
258 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
52717971 |
atctcaatactgtctgatgctggtcttggaatgg |
52718004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 10837088 - 10837016
Alignment:
| Q |
186 |
aggtggcatgtgcatatgcctaaaataatagagaaatcaatctccatactgtctgatgctggtcttggaatgg |
258 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10837088 |
aggtgggatgttcatatgcctaaaataatagagaaatcaatttccatactgtctgatgctggtcttggaatgg |
10837016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University