View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9875_low_15 (Length: 250)
Name: NF9875_low_15
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37091878 - 37092119
Alignment:
| Q |
1 |
ccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatcatagggcggctgttaattttgatgccaccataaccacctgcg |
100 |
Q |
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| T |
37091878 |
ccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatcatagggcggctgttaattttgatgccaccataaccacctgcg |
37091977 |
T |
|
| Q |
101 |
gccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37091978 |
gccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagt |
37092077 |
T |
|
| Q |
201 |
ttgttccatatactccatcttgccatgaattcctcctatgct |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37092078 |
ttgttccatatactccatcttgccatgaattcctcctctgct |
37092119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 17346433 - 17346282
Alignment:
| Q |
86 |
ccataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccctg |
185 |
Q |
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| T |
17346433 |
ccataaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctaccaatctgatcttttacttgaagaatataagtgaagttctgtcctg |
17346334 |
T |
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| Q |
186 |
gtggaattggacagtttgttccatatactccatcttgccatgaattcctcct |
237 |
Q |
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| T |
17346333 |
gagagattggacaatttgtaccatacactccatcctgccatgagtttctcct |
17346282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 17137276 - 17137509
Alignment:
| Q |
1 |
ccaatctcctgccaatatggtgaaatcattcgatggaggaggaaacggtacaggaatcatagggcggctgttaattttgatgccaccataaccacctgcg |
100 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||| | ||| | ||| ||| || |||||||| ||||| |
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| T |
17137276 |
ccaatctcctgccagtatggtgaaatctccggatggaggatcaaaaggtacaggaatcacggagcgagtagcgattgtgaaaccgccataacctcctgct |
17137375 |
T |
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| Q |
101 |
gccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtggaattggacagt |
200 |
Q |
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| T |
17137376 |
gccttgtgaaatgcaagggaaggaaagtagaaatagctgccaatctgatcttttacttgaagaatataagt---gttctttcctggagagattggacaat |
17137472 |
T |
|
| Q |
201 |
ttgttccatatactccatcttgccatgaattcctcct |
237 |
Q |
| |
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|||| ||||| ||||||||||||||||| || ||||| |
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| T |
17137473 |
ttgtaccatacactccatcttgccatgagtttctcct |
17137509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 6796848 - 6796801
Alignment:
| Q |
184 |
tggtggaattggacagtttgttccatatactccatcttgccatgaatt |
231 |
Q |
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| T |
6796848 |
tggtggaataggacagtttgttcccagtactccatcttgccatgaatt |
6796801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 8571806 - 8571937
Alignment:
| Q |
90 |
aaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtgg |
189 |
Q |
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||||||| || || ||||| |||||||| || || || ||| || | |||||||| ||||||||||||||||| | || || ||||||| || ||||| |
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| T |
8571806 |
aaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatcttttacttgaagtatgtatgtgaagttctttccaggtgg |
8571905 |
T |
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| Q |
190 |
aattggacagtttgttccatatactccatctt |
221 |
Q |
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||| ||||| |||||||| | |||||||||| |
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| T |
8571906 |
aatgggacatgttgttccaaacactccatctt |
8571937 |
T |
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