View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9875_low_2 (Length: 540)
Name: NF9875_low_2
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_low_2 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 40093717 - 40093433
Alignment:
| Q |
19 |
aaactaattacatttaggaggaaaatcacaataatatcaaaataattacatttaataagaacaaatcaatttctgatttgtgtcacttattctagaaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093717 |
aaactaattacatttaggaggaaaatcacaataatatcaaaataattacatttaataagaacaaatcaatttctgatttgtgtcacttattctagaaaca |
40093618 |
T |
|
| Q |
119 |
aactaataaatataatttaggaggatatttaaatataaatggatttgtaagcgttctatgaacccgttggtcttttctaccttggattgacatcccctca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093617 |
aactaataaatataatttaggaggatatttaaatataaatgaatttgtaagcgttctatgagcccgttggtcttttctaccttggattgacatcccctca |
40093518 |
T |
|
| Q |
219 |
ccctaaatttaatttatcaataaagaaatattaaacgagtatctcttggaaataagttgaagataacatgttgaatatcatttgt |
303 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093517 |
ccttaaatttaatttatcaataaagaaatattaaacgagtatctcatgaaaataagttgaagataacatgttgaatatcatttgt |
40093433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 315 - 527
Target Start/End: Complemental strand, 40093409 - 40093197
Alignment:
| Q |
315 |
ttgaatatcaattaaagagtttttatagtctttttggcatttgatgaaatcaaaataaaagttaaattaaatttgaatgttactactgtaattaataact |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40093409 |
ttgaatatcaattaaagagtttttatagtctttatggcatttgatgaaatcaaaataaaagttaaattaaatttgaatgttactactgtaattaataact |
40093310 |
T |
|
| Q |
415 |
gaatggagtagtctacgtaaataaaattacatgtatagaatatagacagcatatccaagaacggtttagtagtttagacatgcagcagcttaaaattcca |
514 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
40093309 |
gaatggagtagtccacgtaaataaaattacatgtatagaatatagacagcatatccaagaacggtttagtagtttacacatgcagcagcttaaaattcta |
40093210 |
T |
|
| Q |
515 |
atcgatgcctatg |
527 |
Q |
| |
|
||||||||||||| |
|
|
| T |
40093209 |
atcgatgcctatg |
40093197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 5892463 - 5892405
Alignment:
| Q |
76 |
agaacaaatcaatttctgatttgtgtcacttatt-ctagaaacaaactaataaatataat |
134 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
5892463 |
agaacaaatcaatttctgatttgtgtc-cttatttctagaaacaaactaataaatataat |
5892405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 17574414 - 17574331
Alignment:
| Q |
59 |
aataattacatttaataagaacaaatcaatttctgatttgtgtcacttattctagaaacaaactaataaatataatttaggagg |
142 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||| ||| ||||||||||||| |||||| |
|
|
| T |
17574414 |
aataattacatttaatgcgaacaaatcaaattctgatttgtgtcacctattttagaaaaaaaaaaataaatataattaaggagg |
17574331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 10863241 - 10863166
Alignment:
| Q |
58 |
aaataattacatttaataagaacaaatcaatttctgatttgtgtcactta-ttctagaaacaaactaataaatataa |
133 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
10863241 |
aaataattacatttaatgagaacaaatcaatttatgatttgtgtc-cttatttctaagaacaaactaataaatataa |
10863166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 25725703 - 25725779
Alignment:
| Q |
58 |
aaataattacatttaataagaacaaatcaatttctgatttgtgtcacttattctagaaacaaactaataaatataat |
134 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| |||| | |||||| |||||||||||||||||||| |
|
|
| T |
25725703 |
aaataattacatataatggaaacaaatcaatttctgatttatgtctttatttctaggaacaaactaataaatataat |
25725779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 165570 - 165514
Alignment:
| Q |
78 |
aacaaatcaatttctgatttgtgtcacttatt-ctagaaacaaactaataaatataat |
134 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
165570 |
aacaaatcaatttctgatttatgtc-cttatttctaggaacaaactaataaatataat |
165514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 17607508 - 17607564
Alignment:
| Q |
78 |
aacaaatcaatttctgatttgtgtcactta-ttctagaaacaaactaataaatataat |
134 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
17607508 |
aacaaatcaatttctgatttatgtc-cttatttctaggaacaaactaataaatataat |
17607564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 17602818 - 17602874
Alignment:
| Q |
78 |
aacaaatcaatttctgatttgtgtcacttatt-ctagaaacaaactaataaatataat |
134 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||| |
|
|
| T |
17602818 |
aacaaatcaatttctgatttaggtc-cttatttctaggaacaaactaataaatataat |
17602874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 5239398 - 5239354
Alignment:
| Q |
58 |
aaataattacatttaataagaacaaatcaatttctgatttgtgtc |
102 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
5239398 |
aaataattacatttaatgagaacaaaccaatttttgatttgtgtc |
5239354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 15196 - 15273
Alignment:
| Q |
58 |
aaataattacatttaataagaacaaatcaatttctgatttgtgtcactta-ttctagaaacaaactaataaatataat |
134 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| |||| |||| |||| |||||| || || |||||||||||||| |
|
|
| T |
15196 |
aaataattacatataatggaaacaaatcaatttctaatttatgtcccttatttctaggaataagctaataaatataat |
15273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University