View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9875_low_3 (Length: 438)
Name: NF9875_low_3
Description: NF9875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9875_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 3574233 - 3573827
Alignment:
| Q |
18 |
tcattcatggaagaggaaaacgatgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaattgttttgtttctgcgtttga |
117 |
Q |
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| T |
3574233 |
tcattcatggaagaggaaaacgatgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaattgttttgtttctgcgtttga |
3574134 |
T |
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| Q |
118 |
ttacatgtatgcctgaaggattaattctgctgccatcatagtctgaatatgtatttggttattttaaattgcaatggaataacgtgaattcataaaaaga |
217 |
Q |
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| T |
3574133 |
ttacatgtatgcctgaaggattaattctgctgccatcatagtctgaatatgtatttggttattttaaattgcaatggaataacgtgaattcataaaaaga |
3574034 |
T |
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| Q |
218 |
atcacattttgtagcttcccgactacataaatacagtgagaatgctgaactagtcttgaccataatgagaaagaatgctgataaatgcagtgaggtctga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3574033 |
atcacattttgtagcttcccgactacataaatacagtgagaatgctgaactagtcttgaccataatg----agaatgctgataaatgcagtgaggtctga |
3573938 |
T |
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| Q |
318 |
cactagtttcgaccataattgatgtcatctttgaactagaaagtgtctatttgtgaaacatcatgctagcagccttttgcaatttacaaatgcacacaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573937 |
cactagtttcgaccataattgatgtcatctttgaactagaaagtgtctatttgtgaaacatcatgctagcagccttttgcaatttacaaatgcacacaaa |
3573838 |
T |
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| Q |
418 |
ccatgtctctg |
428 |
Q |
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| T |
3573837 |
ccatgtctctg |
3573827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 3551132 - 3550933
Alignment:
| Q |
40 |
atgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaattgttttgtttctgcgtttgattacatgtatgcctgaaggatt |
139 |
Q |
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| T |
3551132 |
atgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgtt------ctgggtttgattacatgtatgcataaaggatt |
3551039 |
T |
|
| Q |
140 |
aattctgctgccatcatagtctgaatat-gtatttggttattttaaattgcaatggaataacgtgaattcataaaaagaatcacattttgtagcttcccg |
238 |
Q |
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||| || || ||||||||| |||||||| |||| ||||| | ||| || ||||| |||||| ||||||| ||||| ||||||||||||||||||||| | |
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| T |
3551038 |
aatcctccttccatcataggctgaatattgtatctggttttcataagttacaatgaaataacatgaattcgtaaaatgaatcacattttgtagcttccag |
3550939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 1685481 - 1685424
Alignment:
| Q |
39 |
gatgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaa |
96 |
Q |
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| T |
1685481 |
gatgttggagatattacacaagatagaaggtgaaaggaaaatcgaaaagcaagatcaa |
1685424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 3570771 - 3570703
Alignment:
| Q |
39 |
gatgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaattgttttgttt |
107 |
Q |
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|||||||||||||||||||| ||||||||| ||| |||||| |||||||||||| ||||| ||||| |
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| T |
3570771 |
gatgttggagatattacacaagatagaaggtgaaatgaaaattgaaaagcaagatcagttgttctgttt |
3570703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 3560036 - 3560004
Alignment:
| Q |
201 |
gtgaattcataaaaagaatcacattttgtagct |
233 |
Q |
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| T |
3560036 |
gtgaattcataaaaataatcacattttgtagct |
3560004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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