View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9876_high_14 (Length: 240)

Name: NF9876_high_14
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9876_high_14
NF9876_high_14
[»] chr3 (9 HSPs)
chr3 (7-224)||(23032898-23033115)
chr3 (26-224)||(23036388-23036586)
chr3 (26-224)||(23039259-23039457)
chr3 (41-224)||(23140279-23140462)
chr3 (41-224)||(23148991-23149174)
chr3 (16-224)||(23146128-23146336)
chr3 (26-224)||(23024490-23024688)
chr3 (7-220)||(23017261-23017474)
chr3 (88-160)||(22946684-22946756)
[»] scaffold0554 (1 HSPs)
scaffold0554 (7-224)||(6338-6555)
[»] chr6 (1 HSPs)
chr6 (16-223)||(21780021-21780228)
[»] chr1 (1 HSPs)
chr1 (85-222)||(12610182-12610319)


Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 23032898 - 23033115
Alignment:
Q  7 gtagcataggaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttccttt 106  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23032898 gtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaattttcatcaacctttccttt 23032997  T
Q  107 cattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23032998 cattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtc 23033097  T
Q  207 tcgcctccagcaccaaaa 224  Q
    ||||||||||||||||||    
T  23033098 tcgcctccagcaccaaaa 23033115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 23036388 - 23036586
Alignment:
Q  26 agggtggaacctaagggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttcctttcattttgaaaacctctctc 125  Q
    |||||| ||||| |||||||||||||||||||||||||||||| || | |||  |||  |||| || || ||| ||||||||||||||||||||||||||    
T  23036388 agggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttgatacaattctcttcgacccttcctttcattttgaaaacctctctc 23036487  T
Q  126 acctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaa 224  Q
    |||||||||||||||||||||||||||| | |||  |||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  23036488 acctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaa 23036586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 23039259 - 23039457
Alignment:
Q  26 agggtggaacctaagggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttcctttcattttgaaaacctctctc 125  Q
    |||||| ||||| |||||||||||||| ||||| |||||||||||| | ||   |||| |||||||||||||| ||||||||||||||||||||||||||    
T  23039259 agggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaaaacctctctc 23039358  T
Q  126 acctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaa 224  Q
    |||||| |||| |||||||||||||||| | |||| ||||||||||||  ||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  23039359 acctcatcttgcgctttcttcattattcttggatcccttatcatttctaccattgcccagtctatggtgcttgctgatgtctcacctccagcaccaaaa 23039457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 23140279 - 23140462
Alignment:
Q  41 ggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttcctttcattttgaaaacctctctcacctcagcttgtgct 140  Q
    |||||||||||||| |||||||||||||| | | |||  |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||  ||    
T  23140279 ggtttctttgacgattgatttcaaataatggagctcgttgatgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcact 23140378  T
Q  141 ttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaa 224  Q
    ||||||||||||| | |||| ||||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  23140379 ttcttcattattcttggatcccttatcatttctaccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaa 23140462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 23148991 - 23149174
Alignment:
Q  41 ggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttcctttcattttgaaaacctctctcacctcagcttgtgct 140  Q
    |||||||||||| ||| |||||||||||||| | ||   |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23148991 ggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacctttcctttcattttgaaaacctctctcacctcatcttgtgct 23149090  T
Q  141 ttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaa 224  Q
    ||||||||||||| | ||||  ||| ||| |||  ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23149091 ttcttcattattcttggatcctttaccatctctaccattgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaa 23149174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 23146128 - 23146336
Alignment:
Q  16 gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttcctttcattttgaa 115  Q
    ||||| ||| |||||| | ||| | |||||||||||| ||| |||||||||||||| | ||   |||| |||||||||||||| ||||||||||||||||    
T  23146128 gaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaa 23146227  T
Q  116 aacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtctcgcctcca 215  Q
    |||||||||||||||| |||||||||||||||| |||| | ||||  ||| || ||||  ||| ||||||||||||||||||||||||||||| ||||||    
T  23146228 aacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctaccattgcccaatctatggtgcttgctgatgtctcacctcca 23146327  T
Q  216 gcaccaaaa 224  Q
    ||| |||||    
T  23146328 gcagcaaaa 23146336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 23024490 - 23024688
Alignment:
Q  26 agggtggaacctaagggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttcctttcattttgaaaacctctctc 125  Q
    |||||| ||||| |||||||||||||| | |||||||||||||||  | ||   |||  |||| || |||||| |||||||||| ||||||| ||||| |    
T  23024490 agggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattgatacaattctcttcaacccttcctttcatattgaaaatctctcgc 23024589  T
Q  126 acctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtctcgcctccagcaccaaaa 224  Q
    |||||||||||||||||||||||||||| | |||   ||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  23024590 acctcagcttgtgctttcttcattattcttggattctttaccatttctgccattgcccaatctatggtgcttgctgatgtctcacctccagcaccaaaa 23024688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 23017261 - 23017474
Alignment:
Q  7 gtagcataggaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttccttt 106  Q
    |||||| | ||||||||| ||| || || ||||||||||||||||| |||||||||| |||| || | ||    ||| | ||||||||||||  ||||||    
T  23017261 gtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcatttatgcatttttcatcaacccgtccttt 23017360  T
Q  107 cattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtc 206  Q
    |||||| | ||| || ||||| ||| ||||||||||||||||||||| | |||  |||||||||||| |||| ||||||||| |||||||||||||||||    
T  23017361 catttttataacatccctcacttcatcttgtgctttcttcattattcttggattccttatcatttctatcattgcccaatctgtggtgcttgctgatgtc 23017460  T
Q  207 tcgcctccagcacc 220  Q
    || |||||| ||||    
T  23017461 tcacctccaccacc 23017474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 22946684 - 22946756
Alignment:
Q  88 tttcatcaacctttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatc 160  Q
    |||||||||  |||||| |  ||||||| | | ||||||| |||||||||||||||||||||| || ||||||    
T  22946684 tttcatcaatttttcctctttttttgaataacactctcacttcagcttgtgctttcttcattactctttgatc 22946756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 6555 - 6338
Alignment:
Q  7 gtagcataggaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttccttt 106  Q
    |||||| | ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| | | |   ||||||||||||||||||||||| ||    
T  6555 gtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtttgctaatgtaattttcatcaacctttccatt 6456  T
Q  107 cattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtc 206  Q
    || | | ||||| |||| ||||||||||||||||||| ||||||||| | | || ||||||||||||| ||| ||||||||||||||| ||||||||||     
T  6455 caatgtaaaaacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcatttctgccattgcccaatctatggtggttgctgatgta 6356  T
Q  207 tcgcctccagcaccaaaa 224  Q
    || |||||||||||||||    
T  6355 tcacctccagcaccaaaa 6338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 21780021 - 21780228
Alignment:
Q  16 gaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgtgatcggggatgtaattttcatcaacctttcctttcattttgaa 115  Q
    ||||| ||| |||||| | ||| | |||||||||||| |||||||||||||||||| | ||   |||| |||||||||||||| ||||||||||||||||    
T  21780021 gaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattgatgcaattttcatcaacccttcctttcattttgaa 21780120  T
Q  116 aacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaatctatggtgcttgctgatgtctcgcctcca 215  Q
    ||| |||||||| ||| ||||||||||||||||||||| | |||| |||| |||||||  ||| ||||||||||||||||||||||||||||| ||||||    
T  21780121 aacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctaccattgcccaatctatggtgcttgctgatgtctcacctcca 21780220  T
Q  216 gcaccaaa 223  Q
    ||||||||    
T  21780221 gcaccaaa 21780228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 222
Target Start/End: Original strand, 12610182 - 12610319
Alignment:
Q  85 aattttcatcaacctttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgccca 184  Q
    ||||||| ||||| ||||||||||| ||||| |  ||||| |||||| |||||||||||||||| | || || ||| |||| ||  |||| ||| |||||    
T  12610182 aattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacattgccca 12610281  T
Q  185 atctatggtgcttgctgatgtctcgcctccagcaccaa 222  Q
    | |||| ||    |||||||| || |||||||||||||    
T  12610282 aactatagtagaagctgatgtatcacctccagcaccaa 12610319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University