View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_high_15 (Length: 225)
Name: NF9876_high_15
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 3009879 - 3010073
Alignment:
| Q |
20 |
tgttgcagggtttgaaggatagtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaac |
119 |
Q |
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| T |
3009879 |
tgttgcagggtttgaaggatagtggaattggttctcaaggaatcacaaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaac |
3009978 |
T |
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| Q |
120 |
accttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttccactttcctatgcttc |
214 |
Q |
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| T |
3009979 |
accttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttccactttcctatgcttc |
3010073 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 54724744 - 54724647
Alignment:
| Q |
40 |
agtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaacaccttcttatacaatggg |
137 |
Q |
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| T |
54724744 |
agtggaattggatcacaaggaattaccaacagcataaacatgatgacaaaaatcaaaactaccgtgataaacttgccaagcccttcttataccatggg |
54724647 |
T |
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