View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_high_5 (Length: 392)
Name: NF9876_high_5
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 33791161 - 33791539
Alignment:
| Q |
1 |
ttagtatcaactgttaatgatgtacatcttccagggccagaatcctcaatttctcaaacattacaagcttttaaatccaaaggtatgacattggaagaaa |
100 |
Q |
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| T |
33791161 |
ttagtatcaactgttaatgatgtacatcttccagggccagaatcctcaatttctcaaacattacaagcttttaaatccaaaggtatgacattggaagaaa |
33791260 |
T |
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| Q |
101 |
tggttacacttttaggagcacacactgttggatttgctcattgtagtttcattggaaaaagacttggtagtaatgatagttcaatggaccctaatttaag |
200 |
Q |
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| T |
33791261 |
tggttacacttttaggagcacacactgttggatttgctcattgtagtttcattggaaaaagacttggtagtaatgatagttcaatggaccctaatttaag |
33791360 |
T |
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| Q |
201 |
gaaaacgttggttcaatggtgtggtgttgaaggtaaggatccattggtgtttttggatcaaaacacttcttttgtgtttgatcatcaattttataatcag |
300 |
Q |
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| T |
33791361 |
aaaaaggttggttcaatggtgtggtgttgaaggtaaggatccattagtgtttttggatcaaaacacttcttttgtttttgatcatcaattttataatcag |
33791460 |
T |
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| Q |
301 |
attttgttggggagaggtgtgttaacaattgaccagaatttggctctagattccatttccaaaggggttgtcacaggtt |
379 |
Q |
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| T |
33791461 |
attttgttggggagaggtgtgttaacaattgaccagaatttggctctagattccatttccaaaggggttgtcacaggtt |
33791539 |
T |
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