View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_high_6 (Length: 348)
Name: NF9876_high_6
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 42260286 - 42259967
Alignment:
| Q |
19 |
gattgtgtgtgaattgaaaaattccttaaagttttatattggagagtttacacacaacatgtttatatagtggagatcgggctctactgtgcgattggag |
118 |
Q |
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| T |
42260286 |
gattgtgtgtgaattgaaaaattccttaaagttttatattggagagtttacacacaacatgtttatatagtggagatcgggctctactgtgcgattggag |
42260187 |
T |
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| Q |
119 |
gtaagcaatattgtaaacgggcgatgacgcactgaagctgaccaccaaaagcgtgacgccgttgtccagtcgaaccaagtttggccttaagttaattgat |
218 |
Q |
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| T |
42260186 |
gtaagcaattttgtaaacgggtgatgacgcactgaagctgaccaccaaaagtgtgacgtcgttgtccagtcgaaccaagtttggccttaagttaattgat |
42260087 |
T |
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| Q |
219 |
aataggaattttttgtttcagtacacatcatcgccacataaacgttttacatatgtcaacatacgcttgacacacacaccaacatgccctgaacacacgc |
318 |
Q |
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| T |
42260086 |
attaggaattttttgtttcagtacacatcatcgccacataaacgttttacatgtgtcaacatacgcttgacacacacaccaacatgcactgaacacacgc |
42259987 |
T |
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| Q |
319 |
atgggtgcgccctccctttg |
338 |
Q |
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| T |
42259986 |
atgggtgcgccctccctttg |
42259967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 39788891 - 39788956
Alignment:
| Q |
227 |
ttttttgtttcagtacacatcatcgccacataaacgttttacatatgtcaacatacgcttgacaca |
292 |
Q |
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| T |
39788891 |
ttttttgtttcggtacacctcattgccacgtaagcgatttgcatacgtcaacatacacttgacaca |
39788956 |
T |
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