View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_high_8 (Length: 298)
Name: NF9876_high_8
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 38778396 - 38778686
Alignment:
| Q |
1 |
tcatcaaggacttcatgatt-aaggggactttgacaaaggaaatagatgtatgcccttgtttgctacnnnnnnnnatctcttctcagtctcggctacttt |
99 |
Q |
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| T |
38778396 |
tcatcaaggacttcatgattcaaggagactttgacaaaggaaatagatgtatgcccttgcttgctacttttttttatctcttctcagtctcggctacttt |
38778495 |
T |
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| Q |
100 |
tgcattatctatccattgcagggaacttgatgcaaaagtatatatggtcgtactttcaaaaatgagaattttaatcgtgagttctgcttgcttacccctt |
199 |
Q |
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| T |
38778496 |
tccattatctatccattgcagggaacttgatgcaaaagtatatatggtcgtactttcaaaaatgagaattttaatcgtgagttctgcttgcttacccctt |
38778595 |
T |
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| Q |
200 |
tcttccactattcaaatttcattttatgttatttaccgaatggatgtgcattttcatttctttaaacccacctcactcctttacctatgct |
290 |
Q |
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| T |
38778596 |
tcttccactattcaaatttcattttatgttatttaccgaatggatgtgcattttcatttctttaaacccacctcactcctttacctttgct |
38778686 |
T |
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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 52935107 - 52935019
Alignment:
| Q |
104 |
ttatctatccattgcagggaacttgatgcaaaagtatatatggtcgtactttcaaaaatgagaattttaatcgtgagttctgcttgctt |
192 |
Q |
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||||||||| ||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
52935107 |
ttatctatctattgcagggaactggaggcaaaagtatctatggtcgtactttcaaagatgagaattttaatcgtgagctctgtttgctt |
52935019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 52942742 - 52942654
Alignment:
| Q |
104 |
ttatctatccattgcagggaacttgatgcaaaagtatatatggtcgtactttcaaaaatgagaattttaatcgtgagttctgcttgctt |
192 |
Q |
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||||||||| ||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
52942742 |
ttatctatctattgcagggaactggaggcaaaagtatctatggtcgtactttcaaagatgagaattttaatcgtgagctctgtttgctt |
52942654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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