View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9876_low_11 (Length: 333)

Name: NF9876_low_11
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9876_low_11
NF9876_low_11
[»] chr4 (2 HSPs)
chr4 (206-326)||(27316307-27316428)
chr4 (159-199)||(6509856-6509896)
[»] chr3 (3 HSPs)
chr3 (123-205)||(28424311-28424393)
chr3 (1-68)||(28424448-28424514)
chr3 (159-206)||(45807043-45807090)
[»] chr8 (2 HSPs)
chr8 (123-204)||(23388234-23388315)
chr8 (1-68)||(23388367-23388434)
[»] chr7 (2 HSPs)
chr7 (127-206)||(42840750-42840830)
chr7 (159-199)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (159-198)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (159-206)||(10021004-10021051)
[»] chr1 (4 HSPs)
chr1 (159-205)||(17050398-17050444)
chr1 (159-205)||(51606914-51606960)
chr1 (159-191)||(38688643-38688675)
chr1 (159-191)||(49420098-49420130)
[»] chr2 (1 HSPs)
chr2 (172-208)||(44094086-44094122)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 206 - 326
Target Start/End: Complemental strand, 27316428 - 27316307
Alignment:
Q  206 tatgtttaatcctatttatctttgatgatgtatttacttaccataagtaactaatattcttagataaggattgaatgatggtcctctgcat-aattgttt 304  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  27316428 tatgtttaatcctatttatctttgatcatgtatttacatactataagtaactaatattcttagattaggattgaatgatgatcctctgcataaattgttt 27316329  T
Q  305 gcaacatgtgatcgtgatgtcc 326  Q
    ||||||||||||||||| ||||    
T  27316328 gcaacatgtgatcgtgaagtcc 27316307  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 6509856 - 6509896
Alignment:
Q  159 tttcccatcatgggaaacaactttgctttcccaggctaaac 199  Q
    ||||||||  |||||| ||||||||||||||||||||||||    
T  6509856 tttcccatgctgggaagcaactttgctttcccaggctaaac 6509896  T

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Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 28424393 - 28424311
Alignment:
Q  123 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28424393 caggtcatgactgccagctgcaggtaaaaagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 28424311  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 28424514 - 28424448
Alignment:
Q  1 caacagtgtgcaattggattaggagtgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 68  Q
    |||||| ||||||||||| ||||| | ||||| || | |||||||||||||| |||||||||||||||    
T  28424514 caacagcgtgcaattggagtaggattatgaca-caaatgagtcatttgttctctgagaatgcaaagtc 28424448  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 45807043 - 45807090
Alignment:
Q  159 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 206  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||||||    
T  45807043 tttcccatcataggaaacaactttgctttcccattctaaaccccacct 45807090  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 123 - 204
Target Start/End: Complemental strand, 23388315 - 23388234
Alignment:
Q  123 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccac 204  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23388315 caggtcaggactgccagctgcaggtaaaaagcaaattttcccatcatgggaaacaactttgctttcccaggctaaacgccac 23388234  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 23388434 - 23388367
Alignment:
Q  1 caacagtgtgcaattggattaggagtgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 68  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||    
T  23388434 caacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctcttagaatgcaaagtc 23388367  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 42840830 - 42840750
Alignment:
Q  127 tcatgactgccagctgcaggtaaagagcaaagtttcccatcatg-ggaaacaactttgctttcccaggctaaacgccacct 206  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||   |||||||||| ||||||| | || ||||||||||    
T  42840830 tcatgactgccaactggaggtaaaaagcaaagtttcccatcatgaaaaaacaactttactttccccgacttaacgccacct 42840750  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 40740706 - 40740666
Alignment:
Q  159 tttcccatcatgggaaacaactttgctttcccaggctaaac 199  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  40740706 tttcccatcatgggaaacaattttcctttcccatgctaaac 40740666  T

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Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 6112 - 6151
Alignment:
Q  159 tttcccatcatgggaaacaactttgctttcccaggctaaa 198  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  6112 tttcccatcatgggaaacaactttggtttcccaggctaaa 6151  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 10021051 - 10021004
Alignment:
Q  159 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 206  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||    
T  10021051 tttcccatcatgggaaactagtttgttttcccaggctaaacggcacct 10021004  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 17050398 - 17050444
Alignment:
Q  159 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 205  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  17050398 tttcccatcatgggaaacaactttcatttcccaagctaaactccacc 17050444  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 51606960 - 51606914
Alignment:
Q  159 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 205  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||    
T  51606960 tttcccatcatgggaaacaactttccttgcccatgctaaactccacc 51606914  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 38688643 - 38688675
Alignment:
Q  159 tttcccatcatgggaaacaactttgctttccca 191  Q
    |||||||||||||||||||||||| ||||||||    
T  38688643 tttcccatcatgggaaacaacttttctttccca 38688675  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 49420130 - 49420098
Alignment:
Q  159 tttcccatcatgggaaacaactttgctttccca 191  Q
    |||||||||||||||||||||||| ||||||||    
T  49420130 tttcccatcatgggaaacaactttcctttccca 49420098  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 44094122 - 44094086
Alignment:
Q  172 gaaacaactttgctttcccaggctaaacgccacctat 208  Q
    |||||||||||| |||||||||||||| |||||||||    
T  44094122 gaaacaactttgatttcccaggctaaatgccacctat 44094086  T

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