View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_13 (Length: 288)
Name: NF9876_low_13
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 2700948 - 2700733
Alignment:
| Q |
19 |
tacacatattgaaatcaaatcatcaagctaagaacatgtggaaatgc--acaatatccctccaacaattttgcaat---ccaatcatgtaagtgttgtgt |
113 |
Q |
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| T |
2700948 |
tacacatattgaaatcaaatcatcaagcaaagaacacgtggaaatgcgcacaatatccctccaacaattttgcaataatccaatcatgtaagagttgtgt |
2700849 |
T |
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| Q |
114 |
atattaataaaataaaggacaatgatttgaattatgagtatcaaagttttaaattctaagatgaagtaaagtatgattttcttgaagttttttgaaattg |
213 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2700848 |
atattaagaaaataaaggacaatgatttaaattatgagtatcaaagttttaaattctaagatgaagtaaaatatgattttcttgaagttttttgaaattg |
2700749 |
T |
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| Q |
214 |
gtattctaaggaaatg |
229 |
Q |
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||||||||||| |||| |
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| T |
2700748 |
gtattctaaggtaatg |
2700733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 2701866 - 2701769
Alignment:
| Q |
19 |
tacacatattgaaatcaaatcatcaagctaagaacatgtggaaatgcacaatatccctccaacaattttgcaatccaatcatgtaagtgttgtgtata |
116 |
Q |
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|||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2701866 |
tacacatattgaaatcaaatcatccagcaaagaacttgtggaaatgcataatatccctccaacaattttgcaatccaatcatgtaagtgctgtgtata |
2701769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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