View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_16 (Length: 258)
Name: NF9876_low_16
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 8794643 - 8794846
Alignment:
| Q |
17 |
tttatggttgttgaacggtctagtgtgctgcaagaatgaaaatcagttagacaaatcgtattttatctaatccgaatcagaccaatatactactatttga |
116 |
Q |
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| T |
8794643 |
tttatggttgttgaacggtctagtgagctgcaagaatgaaaatcagttaaacaaatcgtattttatctaatccgaatcagaccaatataatactatttga |
8794742 |
T |
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| Q |
117 |
ggatggcataaaccatcggtgggacatgt------taatattgatgtttctttcttctctcttgataataaagtgggtattgatatatgtattagagatg |
210 |
Q |
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| T |
8794743 |
ggatggcataaaccatcggtgggacatgttaagtgtaatatt-atgtttctttcttctctcttgataataaagtggatattgatatatgtattagagatg |
8794841 |
T |
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| Q |
211 |
agttg |
215 |
Q |
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| T |
8794842 |
agttg |
8794846 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Original strand, 48225154 - 48225228
Alignment:
| Q |
146 |
taatattgatgtttctttcttctctcttgataataaagtgggtattgatatatgtattagagatgagttgggtga |
220 |
Q |
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| T |
48225154 |
taatattgatgtttctttctcctcttttcaaaatatagtagggattggtataagcattagagatgagtggggtga |
48225228 |
T |
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