View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_18 (Length: 254)
Name: NF9876_low_18
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 7911906 - 7911673
Alignment:
| Q |
17 |
cagtaatgacccagaagaagcattgcttttgtatcatcaattgcttcatcattcaatacctcacaatgcttatactttccctttccttctcaaagcatgt |
116 |
Q |
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| T |
7911906 |
cagtaatgacccagaagaagcattgcttttgtatcatcaaatgcttcatcattcaatacctcacaatgcttatactttccctttccttctcaaagcatgt |
7911807 |
T |
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| Q |
117 |
tctgcactctcagcattagaagaaacacatcaaatccatgctcaaattatcaaaaggggttttggttcagaggtttatgccacaaactctctccttcgtg |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7911806 |
tctgcactctcagcattagcagaaacacatcaaatccatgttcaaattatcaaaaggggttttggttcagaggtttatgccacaaactctctccttcgtg |
7911707 |
T |
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| Q |
217 |
tctatgcaatttcaggcagcataaagtctgcaca |
250 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
7911706 |
tctatgcaatttcaggcagcataaaatctgcaca |
7911673 |
T |
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