View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9876_low_20 (Length: 250)
Name: NF9876_low_20
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7911669 - 7911432
Alignment:
| Q |
1 |
cctattcgatttgcttccctcacgagatattgtttcttggaatacaatgattgatggatatataaaatgtggaaatgtagagatggcctacaagattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7911669 |
cctattcgatttgcttccctcacgagatattgtttcttggaatacaatgattgatggatatataaaatgtggaaatgtagagatggcctacaagattttt |
7911570 |
T |
|
| Q |
101 |
caagctatgccagagaagaatgtcatctcttggacaagcatgattgttggctttgttaggacaggcatgcacaaagaagctttgtgtcttctacagcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7911569 |
caagctatgccagagaagaatgtcatctcttggacaagcatgattgttggctttgttaggacaggcatgcacaaagaagctttgtgtcttctacagcaaa |
7911470 |
T |
|
| Q |
201 |
tgctggttgctggcatcaaacctgataaaataacccta |
238 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7911469 |
tgctggttgccggcatcaaacctgataaaataacccta |
7911432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University