View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_21 (Length: 250)
Name: NF9876_low_21
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 25161221 - 25161351
Alignment:
| Q |
15 |
ggtgaaagtgcttcttttggaggcttcatcgtgattcgattacgagtgtgcattcgg-acaagactgtgacacttacaactatggtttcacgattgcaaa |
113 |
Q |
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| T |
25161221 |
ggtgaaagtgcttcttttggaggcttcatcgtgattcgattacgagtgtgaattcggaacaagactgtgacactt-----tat--tt------atgcaaa |
25161307 |
T |
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| Q |
114 |
ttgcaatttctgcataaatacatactatgacaactgttagatct |
157 |
Q |
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| T |
25161308 |
ttgcaatttctgcataaatacatactatgacaactgttagatct |
25161351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 24837495 - 24837555
Alignment:
| Q |
165 |
tctcagccgcgagttttgtgcgtcttgcacattctcgacgtgaataatatttcgcagtttc |
225 |
Q |
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| T |
24837495 |
tctcggccgcgagttttgtgcgtcttgcacattctcgacgtgaataatatttcgcagtttc |
24837555 |
T |
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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 28110738 - 28110678
Alignment:
| Q |
165 |
tctcagccgcgagttttgtgcgtcttgcacattctcgacgtgaataatatttcgcagtttc |
225 |
Q |
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| T |
28110738 |
tctcggccgcgagttttgtgcgtcttgcacattctcgacgtgaataatatttcgcagtttc |
28110678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 27844220 - 27844258
Alignment:
| Q |
178 |
ttttgtgcgtcttgcacattctcgacgtgaataatattt |
216 |
Q |
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| T |
27844220 |
ttttgtgcgtcttgcacattctcgacgtgaataatattt |
27844258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 36532147 - 36532202
Alignment:
| Q |
170 |
gccgcgagttttgtgcgtcttgcacattctcgacgtgaataatatttcgcagtttc |
225 |
Q |
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| T |
36532147 |
gccgcgagttttgtgcgtcttgcacattctcgacgtgaataatatttcgcagtttc |
36532202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 6516295 - 6516235
Alignment:
| Q |
165 |
tctcagccgcgagttttgtgcgtcttgcacattctcgacgtgaataatatttcgcagtttc |
225 |
Q |
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| T |
6516295 |
tctctgccgcgagttttgtgcgtcttgcacattctcaacgtgaataatatttcgcagtttc |
6516235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 45218701 - 45218739
Alignment:
| Q |
178 |
ttttgtgcgtcttgcacattctcgacgtgaataatattt |
216 |
Q |
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| T |
45218701 |
ttttgtgcgtcttgcacagtctcgacgtgaataaaattt |
45218739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 21427965 - 21427905
Alignment:
| Q |
165 |
tctcagccgcgagttttgtgcgtcttgcacattctcgacgtgaataatatttcgcagtttc |
225 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||| ||||||||||| || ||||| |
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| T |
21427965 |
tctcggccacgagttttgtgcgtcttgcacattctcgacgcgaataatattttgctgtttc |
21427905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 34326716 - 34326766
Alignment:
| Q |
170 |
gccgcgagtttt-gtgcgtcttgcacattctcgacgtgaataatatttcgc |
219 |
Q |
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| T |
34326716 |
gccgcgagtttttgtgcgtcttgcacaatctcgacgtgaataaaatttcgc |
34326766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 21647441 - 21647403
Alignment:
| Q |
178 |
ttttgtgcgtcttgcacattctcgacgtgaataatattt |
216 |
Q |
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| T |
21647441 |
ttttctgcgtcttgcatattctcgacgtgaataatattt |
21647403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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