View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_24 (Length: 239)
Name: NF9876_low_24
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 5883919 - 5884142
Alignment:
| Q |
1 |
ttcctataattggaaaccttcaccaactcaaacaaccactccaccacacattccacaccttatcacaaaaatatggccaaatcttttctctttggttcgg |
100 |
Q |
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| T |
5883919 |
ttcctataattggaaaccttcaccaactcaaacaaccactccaccacacattccacaccttatcacaaaaatatggccaaatcttttctctttggttcgg |
5884018 |
T |
|
| Q |
101 |
ttctcgtctcgtcgttgttgtttcatcgttaacaatagcacaagaatgttttaccaaaaacgacatagttttagcgaaccgacctcatttcttaactgga |
200 |
Q |
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| T |
5884019 |
ttctcgtctcgtcgttgttgtttcatcgttaacaatagcacaagaatgttttaccaaaaacgacatagttttagcgaaccgacctcatttcttaactgga |
5884118 |
T |
|
| Q |
201 |
aaatatattggctacaacaatact |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
5884119 |
aaatatattggctacaacaatact |
5884142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 39587187 - 39587079
Alignment:
| Q |
19 |
ttcaccaactcaaacaaccactccaccacacattccacaccttatcacaaaaatatggccaaatcttttctctttggttcggttctcgtctcgtcgttgt |
118 |
Q |
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|||| ||||||||||| ||||| |||| || |||||||| | ||||||||||| || ||| ||||||| || |||||||||| ||| | ||||| || |
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| T |
39587187 |
ttcatcaactcaaacacccacttcaccgtaccttccacactctctcacaaaaatacggtcaagtcttttccctacggttcggttcacgttttgtcgtcgt |
39587088 |
T |
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| Q |
119 |
tgtttcatc |
127 |
Q |
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| T |
39587087 |
tgtttcatc |
39587079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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