View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_25 (Length: 237)
Name: NF9876_low_25
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 25161376 - 25161519
Alignment:
| Q |
1 |
tattaatttagttaatgtataatgtaagcagctcaatcgcaaatgaatgaccaaaattgaccacatataact-----tacctggtattattacaactaca |
95 |
Q |
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| T |
25161376 |
tattaatttagttaatgtataatgtaagcagctcaatctcaaatgaatgaccaaaattgactacatataactacctctacctggtattattacaactaca |
25161475 |
T |
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| Q |
96 |
aagaatccatattcaaacatgctcatgcatcttaagagtcgtag |
139 |
Q |
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| T |
25161476 |
aagaatccatattcaaacatgctcatgcatcttaagagtcgtag |
25161519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 25161541 - 25161627
Alignment:
| Q |
137 |
tagtggaagtaactagcctaaaaaacaaaatctaaactaatatttcccagccaaataatcagctagaatcataataatattagtaac |
223 |
Q |
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| T |
25161541 |
tagtggaagtaactagcctaaaaaacaaaatctaaactaatatttcccagccaaataatcagctagaatcataataatattagtaac |
25161627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 25167820 - 25167774
Alignment:
| Q |
169 |
taaactaatatttcccagccaaataatcagctagaatcataataata |
215 |
Q |
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| T |
25167820 |
taaactaatattttccagccaaataatcagctagaatcataataata |
25167774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 55006461 - 55006541
Alignment:
| Q |
139 |
gtggaagtaactagcctaaaaaacaaaatctaaactaatatttcccagccaaataatcagctagaatcataataatattag |
219 |
Q |
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| T |
55006461 |
gtggaagtaagtatcctaaagaacaaaatctaaactaatatttgccagccatataatcagctagaatcataataatattag |
55006541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 55006305 - 55006363
Alignment:
| Q |
79 |
gtattattacaactacaaagaatccatattcaaacatgctcatgcatcttaagagtcgt |
137 |
Q |
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| T |
55006305 |
gtattattaccactacaaagaatccatattcaaacatgcttgtgtatcttgagagtcgt |
55006363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 55006216 - 55006274
Alignment:
| Q |
1 |
tattaatttagttaatgtataatgtaagcagctcaatcgcaaatgaatgaccaaaattg |
59 |
Q |
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| T |
55006216 |
tattactttagttaatgtgtaattttagcagcttaatctcaaatgaatgtccaaaattg |
55006274 |
T |
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