View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_3 (Length: 472)
Name: NF9876_low_3
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 24193948 - 24194401
Alignment:
| Q |
1 |
aacagaagaccaagaaaatttctcttcgtcggaagcaacagactcagaattgttcccagcagaatactcctgcgcttgaacctgtccagaagatggataa |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24193948 |
aacagaagaccaagaaaatttctcttggtcggaagcaacagactcagaattgttcccagcagaatactcctgcgcttgaacctgtccagaagatggataa |
24194047 |
T |
|
| Q |
101 |
acaaaattagactaaaaacgaataaattttgatgagtttaccagtttctgagtagttacttggaatctacgtttatgagaggagtgagaggtaagaagtg |
200 |
Q |
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| T |
24194048 |
acaaaattagactaaaaacgaagaaattttgatgagtttaccagtttctgagtacttacttggaatctacgtttatgagaggagtgagaggtaagaagtg |
24194147 |
T |
|
| Q |
201 |
gataagtgacacgtgttggcgacaaatgattgtttgtggaagaagaaatgatgcgtggatcgatatgagaattagagaacgaagcttttgaactctttac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
24194148 |
gataagtgacacgtgttggcgacaaatgattgtttgtggaagaagaaatgatgcgtggattgatatgagaattagagaacgaagcttttgaattctttac |
24194247 |
T |
|
| Q |
301 |
tctttgatggtgaagtgagttgaataaagagagtttgaaactgaagagtgctgttgatgatgccatttgtaagtaaatgttttggtgagtttgtagaatc |
400 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24194248 |
tctttgatggtgaagtgagttgaatagagagagtttgaaactgaagagtgctgttgatgatgccatttgtaagt-aatgttttggtgagtttgtagaatc |
24194346 |
T |
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| Q |
401 |
aggagtgaggaatcatggctgtttgttatctgttggtgaatcttgacaagtaaat |
455 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24194347 |
aggagtgaggaatcatggctgtttattatctgttggtgaatcttgacaagtaaat |
24194401 |
T |
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