View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_4 (Length: 439)
Name: NF9876_low_4
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 43755531 - 43755964
Alignment:
| Q |
1 |
tgtttcgaagttgactaaagccattgtatccttcttttcatcatatttatatgatcattcattttcaatgtttactatgctttgttgagaagatgagact |
100 |
Q |
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| T |
43755531 |
tgtttcgaagttgactaaagccattgtatccttcttttcatcatatttatatgatcattcattttcaatgtttactatgctttgttgagaagatgaaact |
43755630 |
T |
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| Q |
101 |
tgaaaatgagctctaattttcaatttgtttattttctactttattgaattatgttatagcaatgacatttctgtccaaaggcgtgtctgacatgtgtgtg |
200 |
Q |
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| T |
43755631 |
tgaaaatgagctctaattttcaatttgtttattttctactttattgaattatgttatagcaacgacatttctgtccaaaggcgtgtctaacatgtgtgtg |
43755730 |
T |
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| Q |
201 |
tgcgtgcgcgacacatgtccaacaccggaaacatttgatcatatttaagtattcttttcttcaaattagtcgtgtttacgagtcattgttagcgtcgtgt |
300 |
Q |
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| T |
43755731 |
cgcgcgcgcgacacatgtccaacaccggaaacatttgatcatatttaagtattcttttcttcaaattagtcgtgtttacgagtcattgttagcgtcgtgt |
43755830 |
T |
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| Q |
301 |
caaggccatataggttatcatattattgttgttggcattgctattttattcaaaattttccaccttttccagttccagttatcaccttcttaagctacaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43755831 |
caaggccatataggttatcatattattgttgttggcattgatattttattcaaaattttccaccttttccagttccagttatcacctacttaagctacaa |
43755930 |
T |
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| Q |
401 |
gaccctccatgtttgcaacttttatgtacttgtt |
434 |
Q |
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| T |
43755931 |
gaccctccatgtttgcaaattttatgtacttgtt |
43755964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 43760188 - 43760256
Alignment:
| Q |
1 |
tgtttcgaagttgactaaagccattgtatccttcttttcatcatatttatatgatcattcattttcaat |
69 |
Q |
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|||||| ||||||||||||||||||||||||||||| | |||||| ||||| |||||| ||||||||| |
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| T |
43760188 |
tgtttccaagttgactaaagccattgtatccttcttcttatcataattatagcatcattaattttcaat |
43760256 |
T |
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