View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_5 (Length: 429)
Name: NF9876_low_5
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 35761981 - 35762380
Alignment:
| Q |
18 |
caaccatggacactttaactcaaatatgtttgtttattaattattctttgaaagnnnnnnnnnnnnn-ttaagttagcaagcaaccaagtatagggcttt |
116 |
Q |
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| T |
35761981 |
caaccatggacactttaactcaaatatgtttgtttattaattattctttgaaagaaagaaaaaaaaaattaagttagcaagcaaccaagtatagggcttt |
35762080 |
T |
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| Q |
117 |
ctaatttaatatcacccaatcattttctctaaatatttgggtttttgtttatcagtttaacttggaataaacccacattttgttgtatcatcttcatcaa |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35762081 |
ctaatttaatatcacccaattattttctctaaatatttgggtttttgtttatcggtttaacttggaataaacccacattttgttgtatcatcttcatcaa |
35762180 |
T |
|
| Q |
217 |
atccattaatttgggattgaataatatttacatatctcatatatttttctatacgcatcaaccgataacgaatcaaagactacatggttnnnnnnntcaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||| |
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| T |
35762181 |
atccattaatttgggattgaataatatttacatatctcatatatttttctatacgcatcagccaataacgaatcaaagactacatggttaaaaaaatcaa |
35762280 |
T |
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| Q |
317 |
agcatctatattacttgtttcctacaccaaattggtaatacattgtagtgtttttatccaccatagccatggttaatatgactaggttacttctctgctc |
416 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35762281 |
agaatctatattacttgtttcctacaccaaattggtaatacattgtagtgtttttatccaccatagccatggttaatatgactaggttacttctctgctc |
35762380 |
T |
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