View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_8 (Length: 362)
Name: NF9876_low_8
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 39 - 346
Target Start/End: Original strand, 46122904 - 46123211
Alignment:
| Q |
39 |
ccaataacaaacaacacagtcctgaatttgaataaaaaagtgaataatccaattatacagatttgcactcacaaggtgattttggaggcacagtacaagg |
138 |
Q |
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| T |
46122904 |
ccaataacaaacaacacagtcctgaatttgaataaaaaagtgaataatccaattatacagatttgcactcacaaggtgattttggaggcacagtacaagg |
46123003 |
T |
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| Q |
139 |
tttccatccttggtaagccaagggagaccaaagattggtttgtacttcaacagactgaaaacgagaacnnnnnnngtaacaacattgtgtagaaaacttt |
238 |
Q |
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| T |
46123004 |
tttccatccttggtaagccaagggagaccaaagattggtttgtacttcaacagactgaaaacgagaacaaaaaaagtaaccacattgtgtagaaaacttt |
46123103 |
T |
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| Q |
239 |
tacaccatcaattgtaacttggaagcactagatcattaaaatgacacatatgatcggtaatgatttgttgacagtgtaaaacattttacaatcaagaatg |
338 |
Q |
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| T |
46123104 |
tacaccatcaattgtaacttggaagcactagatcattaaaatgacacatatgatcggtaatgatttgttgacagtgtaaaacattttacaatcaagaatg |
46123203 |
T |
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| Q |
339 |
aagagaaa |
346 |
Q |
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|||||||| |
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| T |
46123204 |
aagagaaa |
46123211 |
T |
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