View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9876_low_9 (Length: 356)
Name: NF9876_low_9
Description: NF9876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9876_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 46735581 - 46735912
Alignment:
| Q |
7 |
tttggtgttgctagggttgaagcggtaaatccaagtgaaatgacgggcagtactggaaccgttgggtatatggcacctgaggtattaattctgctttgaa |
106 |
Q |
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| T |
46735581 |
tttggagttgctagggttgaagcggtaaatccaagtgaaatgacgggcagtactggaaccgttgggtatatggcaccagaggtattaattctgctttgaa |
46735680 |
T |
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| Q |
107 |
attcactctagatattatgtggttcaatgcgatggctgattatggaagtgttatattttatgattatcactcacgtgactaagaaattggaactctattt |
206 |
Q |
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| T |
46735681 |
attcactctagatattatgtggttcaatgcgatggctgattatggaagtgttatattctatgattatcactcacgtgactaagaaattggaactctagtt |
46735780 |
T |
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| Q |
207 |
caataatttgctttaatcttggcgttaaactatgtgcaggttataaatggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgt |
306 |
Q |
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| T |
46735781 |
caataatttgctttaatcttggcgttaaactatgtgcaggttatatgtggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgt |
46735880 |
T |
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| Q |
307 |
gggaaatttactgttgcgacatgccttatatg |
338 |
Q |
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| T |
46735881 |
gggaaatttactgctgcgacatgccttatatg |
46735912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 57 - 278
Target Start/End: Complemental strand, 19409807 - 19409586
Alignment:
| Q |
57 |
tactggaaccgttgggtatatggcacctgaggtattaattctgctttgaaattcactctagatattatgtggttcaatgcgatggctgattatggaagtg |
156 |
Q |
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| T |
19409807 |
tactggaactgttgggtatatggcaccagaggtattaattctgctttgaaattcgctctagatattacgtggttcaatgcgatggctgattatggaagtg |
19409708 |
T |
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| Q |
157 |
ttatattttatgattatcactcacgtgactaagaaattggaactctatttcaataatttgctttaatcttggcgttaaactatgtgcaggttataaatgg |
256 |
Q |
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| T |
19409707 |
ttatattttatgaatatcactcacatgactaagaaattggaacactatttcaataatttgcttgaaacttggcgttaaaatatgtgcaggttataaatag |
19409608 |
T |
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| Q |
257 |
taagccttacaacagaagctgt |
278 |
Q |
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| T |
19409607 |
taggccttacaacagaagctgt |
19409586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 985860 - 985942
Alignment:
| Q |
253 |
atggtaagccttacaacagaagctgtgatgtctacagctttggcatttgcttgtgggaaatttactgttgcgacatgccttat |
335 |
Q |
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| T |
985860 |
atggtaaaccttacaacaggacatgtgatgtatacagctttggcatttgcttgtgggaaatttattgctgtgatatgccttat |
985942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 985378 - 985476
Alignment:
| Q |
7 |
tttggtgttgctagggttgaagcggtaaatccaagtgaaatgacgggcagtactggaaccgttgggtatatggcacctgaggtattaattctgctttga |
105 |
Q |
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| T |
985378 |
tttggagttgctcgggttgaagctttgaatccaagtgacatgactggtgaaactggaacccttggatatatggctcctgaggtattaatgctgctttga |
985476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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