View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9877_high_2 (Length: 576)
Name: NF9877_high_2
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9877_high_2 |
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| [»] scaffold0286 (2 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 12631 - 13044
Alignment:
| Q |
17 |
catagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631 |
catagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatat |
12730 |
T |
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| Q |
117 |
gatattgagtttgacatcgacagtatcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaat |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12731 |
gatattgagtttgacatcgacagtatcaatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaat |
12830 |
T |
|
| Q |
217 |
ctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12831 |
ctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtgg |
12930 |
T |
|
| Q |
317 |
aattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaagactcaatagttcgctatcaca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12931 |
aattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaagactcaatagttctctatcaca |
13030 |
T |
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| Q |
417 |
attccacccgcatc |
430 |
Q |
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| T |
13031 |
attccacccgcatc |
13044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 517 - 566
Target Start/End: Original strand, 13132 - 13181
Alignment:
| Q |
517 |
gtcccctgagttcctgtagggcacagacttgtatgtagcttttccctttg |
566 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13132 |
gtcccccgagttcctgtagggcacagacttgtatgtagcttttctctttg |
13181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 2170630 - 2170217
Alignment:
| Q |
17 |
catagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170630 |
catagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatat |
2170531 |
T |
|
| Q |
117 |
gatattgagtttgacatcgacagtatcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaat |
216 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170530 |
gatattgagtttgacatcgacagtatcaatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaat |
2170431 |
T |
|
| Q |
217 |
ctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2170430 |
ctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtgg |
2170331 |
T |
|
| Q |
317 |
aattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaagactcaatagttcgctatcaca |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2170330 |
aattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaaattagatgaagactcaatagttctctatcaca |
2170231 |
T |
|
| Q |
417 |
attccacccgcatc |
430 |
Q |
| |
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|||||||||||||| |
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| T |
2170230 |
attccacccgcatc |
2170217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 2187996 - 2188357
Alignment:
| Q |
17 |
catagctctcttcgttgctagtaaatcaatggataacaagcatctcaacagtgattttccttcattaacagcctatctgagaaccaatatctataaatat |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||| ||| | || |
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| T |
2187996 |
catagctctcttcgttgctagtctatcaacggataacaggcatcccaacagtgattttctttcattaacagcccatctgagaacctataccgat------ |
2188089 |
T |
|
| Q |
117 |
gatattgagtttgacatcgacagtatcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctacgactgcaagagatgaaactcgaat |
216 |
Q |
| |
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| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| ||||||||| |
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| T |
2188090 |
ggtattgagtttgacatcaacagtgtcgatctcaatctcgtgatacaaccagatcatacatatctatatgatctgcgacagcaagtgatggaactcgaat |
2188189 |
T |
|
| Q |
217 |
ctgtactaggcgaagcacttttaatagctgaatggatccatgcagagattacgtttaagtgtgagggttgcatagaggaagcattggttatagaaagtgg |
316 |
Q |
| |
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||| || | || || |||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||| |
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| T |
2188190 |
ctgacctggagaaaacagatttaatagatgaatggatccatgcagagattacgtttaagtgtgagggcggcagagaggaagaattgtttatagaaagtgg |
2188289 |
T |
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| Q |
317 |
aattcacgtattcaagctgaaaagtagtatggaggatattcgattcaccaatccgtatgaatgagaaa |
384 |
Q |
| |
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| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || | ||||||| |
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| T |
2188290 |
agttcacgtattcaagctgaaaactagtatggaggatattcgatttaccaatccgcataattgagaaa |
2188357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 517 - 566
Target Start/End: Complemental strand, 2170130 - 2170081
Alignment:
| Q |
517 |
gtcccctgagttcctgtagggcacagacttgtatgtagcttttccctttg |
566 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2170130 |
gtcccccgagttcctgtagggcacagacttgtatgtagcttttctctttg |
2170081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 16694585 - 16694636
Alignment:
| Q |
304 |
ttatagaaagtggaattcacgtattcaagctgaaaagtagtatggaggatat |
355 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||||| ||||||||||| |
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|
| T |
16694585 |
ttatagaaagtggaattcacttattcaagcagaaaagtagcatggaggatat |
16694636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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