View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9877_high_5 (Length: 294)

Name: NF9877_high_5
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9877_high_5
NF9877_high_5
[»] chr2 (8 HSPs)
chr2 (26-284)||(12349643-12349906)
chr2 (21-107)||(8492531-8492618)
chr2 (46-112)||(17486858-17486924)
chr2 (26-78)||(4531735-4531787)
chr2 (42-101)||(23992309-23992368)
chr2 (59-114)||(33543833-33543888)
chr2 (35-101)||(5878107-5878173)
chr2 (46-91)||(3746971-3747016)
[»] chr6 (3 HSPs)
chr6 (25-114)||(29647093-29647182)
chr6 (42-105)||(6216451-6216514)
chr6 (27-114)||(30920379-30920466)
[»] chr1 (6 HSPs)
chr1 (42-116)||(6468289-6468363)
chr1 (22-89)||(50520125-50520192)
chr1 (35-105)||(43844179-43844249)
chr1 (30-91)||(4692968-4693029)
chr1 (42-90)||(25364449-25364497)
chr1 (25-101)||(48527249-48527325)
[»] scaffold0003 (1 HSPs)
scaffold0003 (56-112)||(349540-349596)
[»] chr8 (5 HSPs)
chr8 (19-113)||(7219634-7219728)
chr8 (63-109)||(13832301-13832347)
chr8 (25-104)||(39362533-39362611)
chr8 (33-104)||(1417429-1417500)
chr8 (36-114)||(30558514-30558590)
[»] scaffold0171 (1 HSPs)
scaffold0171 (25-102)||(9888-9965)
[»] chr3 (3 HSPs)
chr3 (20-101)||(20141546-20141627)
chr3 (59-101)||(40473672-40473714)
chr3 (55-113)||(23271517-23271575)
[»] chr4 (2 HSPs)
chr4 (24-112)||(34116208-34116295)
chr4 (42-78)||(29597704-29597740)
[»] chr7 (3 HSPs)
chr7 (54-113)||(2402120-2402179)
chr7 (46-112)||(40915234-40915300)
chr7 (21-78)||(43485007-43485064)
[»] scaffold0041 (1 HSPs)
scaffold0041 (46-112)||(57795-57861)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 26 - 284
Target Start/End: Original strand, 12349643 - 12349906
Alignment:
Q  26 tatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttgctttactggata 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12349643 tatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttgctttactggata 12349742  T
Q  126 tcgatctccaaccaagctttaaggtacccaataatttaccaacattaaaactcaaaatgactttgcataatgtttacaaatagaaattaaaactttgata 225  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12349743 tcgatctccaaccaagctttaaggtacctaataatttaccaacattaaaactcaaaatgactttgcataatgtttacaaatagaaattaaaactttgata 12349842  T
Q  226 tatagtagaaat-attataaaacttcatg----gagataaacatcaatttgtgatatgtctctg 284  Q
    |||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||||||    
T  12349843 tatagtagaaatcattataaaacttcatggggtgagataaacatcaatttgtgatatgtctctg 12349906  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 8492531 - 8492618
Alignment:
Q  21 ttggatatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaa-gaataaaatcaaattttgaatga 107  Q
    |||| |||||| |||||||| ||||| |||||  |||||||||||||||||||||||| |||||  || |||||||||||||||||||    
T  8492531 ttggctatgtattcatcattcaattactcaatattatgtcatatttttatattaatttatttaataaaaaaaatcaaattttgaatga 8492618  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 17486924 - 17486858
Alignment:
Q  46 attcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagtttt 112  Q
    ||||||||| || | |||||||||||||||||| ||||| ||||||||||||  || ||||||||||    
T  17486924 attcaatgacatattatatttttatattaatttatttaaaaataaaatcaaacattaaatgagtttt 17486858  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 4531735 - 4531787
Alignment:
Q  26 tatgtactcatcattgaattattcaatgatatgtcatatttttatattaattt 78  Q
    ||||||||||||||| ||| ||| |||||||||| |||||||| |||||||||    
T  4531735 tatgtactcatcattcaatcatttaatgatatgttatatttttgtattaattt 4531787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 23992368 - 23992309
Alignment:
Q  42 aattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaatttt 101  Q
    ||||||||||| | ||  ||||||||||||||||||| ||||| ||| ||||||||||||    
T  23992368 aattattcaattaaatcccatatttttatattaatttatttaaaaattaaatcaaatttt 23992309  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 33543833 - 33543888
Alignment:
Q  59 tcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttgc 114  Q
    |||||||||||||||||||| ||||| ||  ||||||| |||| ||||||||||||    
T  33543833 tcatatttttatattaatttatttaataaataaatcaactttttaatgagttttgc 33543888  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 5878173 - 5878107
Alignment:
Q  35 atcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaatttt 101  Q
    |||||| ||||||||||||  |||| |||||||||||||||||| | | | |||||| |||||||||    
T  5878173 atcattaaattattcaatgtcatgttatatttttatattaatttatcttaaaataaattcaaatttt 5878107  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 3746971 - 3747016
Alignment:
Q  46 attcaatgatatgtcatatttttatattaatttgtttaagaataaa 91  Q
    ||||||||||||||||||||||||||||| ||| ||| | ||||||    
T  3746971 attcaatgatatgtcatatttttatattactttattttaaaataaa 3747016  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 114
Target Start/End: Complemental strand, 29647182 - 29647093
Alignment:
Q  25 atatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttgc 114  Q
    |||||||| ||||||  ||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||| ||||||||||| ||||    
T  29647182 atatgtacacatcatcaaattattcaatgatatgccatatttttatattaatttatttaaaaatcaaatcaaaatttgaatgagtattgc 29647093  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 6216451 - 6216514
Alignment:
Q  42 aattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaat 105  Q
    ||||||||||||||||| ||||||||||| || |||| ||| | |||||||  |||||||||||    
T  6216451 aattattcaatgatatgccatatttttatttttatttattttaaaataaaagaaaattttgaat 6216514  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 30920379 - 30920466
Alignment:
Q  27 atgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttgc 114  Q
    |||||| ||||||  |||||||||| ||||||||||| ||||  ||||| || | ||  ||| |||||||||||||||||| ||||||    
T  30920379 atgtacccatcatctaattattcaacgatatgtcataattttgcattaaattatatacaaatcaaatcaaattttgaatgaattttgc 30920466  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 6468363 - 6468289
Alignment:
Q  42 aattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttgctt 116  Q
    ||||||||||||| || |||||||||| ||||| ||| ||||| |||||||||||||||||||||| ||||||||    
T  6468363 aattattcaatgaaatatcatatttttgtattagtttatttaaaaataaaatcaaattttgaatgatttttgctt 6468289  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 50520125 - 50520192
Alignment:
Q  22 tggatatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaata 89  Q
    ||||||| || |||||||| ||||||||||||| |||||||| |||| ||||| ||| ||||| ||||    
T  50520125 tggatatatattcatcatttaattattcaatgacatgtcataattttgtattattttatttaaaaata 50520192  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 43844249 - 43844179
Alignment:
Q  35 atcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaat 105  Q
    |||||| ||||||||||||  |||||||||||||||||   ||| |||||  || ||||||||||||||||    
T  43844249 atcatttaattattcaatgtcatgtcatatttttatatctgtttatttaaatattaaatcaaattttgaat 43844179  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 4693029 - 4692968
Alignment:
Q  30 tactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaa 91  Q
    ||||||||||| ||||||||||||| |||||||||||  || ||||||| ||| | ||||||    
T  4693029 tactcatcattcaattattcaatgacatgtcatatttgcatcttaatttattttaaaataaa 4692968  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 25364449 - 25364497
Alignment:
Q  42 aattattcaatgatatgtcatatttttatattaatttgtttaagaataa 90  Q
    |||||||||||||||| |||||| ||| ||||||||| ||||| |||||    
T  25364449 aattattcaatgatatatcatatatttgtattaatttatttaaaaataa 25364497  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 48527325 - 48527249
Alignment:
Q  25 atatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaatttt 101  Q
    ||||||| | |||||| ||||||||||||  || |||||||||||  ||||||  ||||| ||| ||||||||||||    
T  48527325 atatgtattaatcattcaattattcaatgtcatttcatatttttaagttaattaatttaaaaatcaaatcaaatttt 48527249  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 349596 - 349540
Alignment:
Q  56 atgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagtttt 112  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||    
T  349596 atgtcatatttttatattattttatttaagaatcaaatcaaattttaaatgagtttt 349540  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 7219634 - 7219728
Alignment:
Q  19 gattggatatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttg 113  Q
    ||||||| || |||| |||||| ||||||| |||||| |||||||||| | ||||| ||| | ||| | | ||||||||||||||||||||||||    
T  7219634 gattggacatatacttatcattcaattatttaatgatgtgtcatatttatgtattagtttatctaaaactcaaatcaaattttgaatgagttttg 7219728  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 13832347 - 13832301
Alignment:
Q  63 atttttatattaatttgtttaagaataaaatcaaattttgaatgagt 109  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  13832347 atttttctattaatttgtttaataataaaatcaaattttgaatgagt 13832301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 39362611 - 39362533
Alignment:
Q  25 atatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaa 104  Q
    ||||||| |||| ||| |||||||| ||||||||||| ||||| |||||||||| ||||| ||| |||| ||||||||||    
T  39362611 atatgtagtcatgattcaattattcgatgatatgtcaaatttt-atattaatttatttaaaaattaaattaaattttgaa 39362533  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 1417429 - 1417500
Alignment:
Q  33 tcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaa 104  Q
    ||||| || ||||||| ||||| |||| |||||||||||||||||| ||||| | | |||| ||||||||||    
T  1417429 tcatcgtttaattattaaatgacatgttatatttttatattaatttatttaaaagttaaattaaattttgaa 1417500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 30558514 - 30558590
Alignment:
Q  36 tcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttgc 114  Q
    ||||| ||||||| ||||| | ||||||||||||||||||||| ||||| |||||||| | | ||| ||||||||||||    
T  30558514 tcattcaattattaaatgaca-gtcatatttttatattaatttatttaaaaataaaat-agaatttaaatgagttttgc 30558590  T

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Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 9888 - 9965
Alignment:
Q  25 atatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttg 102  Q
    ||||||||  |||||  |||||||||| |  ||||||||||||||||||||||| ||||| ||||||||| |||||||    
T  9888 atatgtaccaatcatcaaattattcaacgtcatgtcatatttttatattaatttatttaaaaataaaatcgaattttg 9965  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 20141546 - 20141627
Alignment:
Q  20 attggatatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaatttt 101  Q
    |||| ||||||| |||||||| ||| |||  |||||||||||||||||| |||| |||| ||||| ||||||||||| ||||    
T  20141546 attgaatatgtattcatcattcaatcattacatgatatgtcatatttttgtattcatttatttaaaaataaaatcaattttt 20141627  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 40473672 - 40473714
Alignment:
Q  59 tcatatttttatattaatttgtttaagaataaaatcaaatttt 101  Q
    |||||||||||||||||||||||||| ||| ||||||||||||    
T  40473672 tcatatttttatattaatttgtttaaaaattaaatcaaatttt 40473714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 23271575 - 23271517
Alignment:
Q  55 tatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttg 113  Q
    |||||||||||||| |||| |||| ||||| ||||||||||| |||| ||||| |||||    
T  23271575 tatgtcatatttttgtattcatttatttaaaaataaaatcaattttttaatgaattttg 23271517  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 34116208 - 34116295
Alignment:
Q  24 gatatgtactcatcattgaattattcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagtttt 112  Q
    |||||||||| |||||| ||||||| ||||  || |||||||||| ||||||||| | ||| | ||||||||||||||||| |||||||    
T  34116208 gatatgtact-atcatttaattatttaatgccatatcatatttttgtattaatttatctaaaattaaaatcaaattttgaaagagtttt 34116295  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 29597704 - 29597740
Alignment:
Q  42 aattattcaatgatatgtcatatttttatattaattt 78  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29597704 aattattcaatgacatgtcatatttttatattaattt 29597740  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 2402179 - 2402120
Alignment:
Q  54 atatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagttttg 113  Q
    |||||| |||||||||||||||||| ||| | |||||||||| ||||| |||||||||||    
T  2402179 atatgttatatttttatattaatttattttataataaaatcacattttaaatgagttttg 2402120  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 40915234 - 40915300
Alignment:
Q  46 attcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagtttt 112  Q
    |||||||  |||||||||||||||||| ||||| ||| | |||||| | ||||||||||||| ||||    
T  40915234 attcaatattatgtcatatttttatatcaatttattttaaaataaatttaaattttgaatgaatttt 40915300  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 43485007 - 43485064
Alignment:
Q  21 ttggatatgtactcatcattgaattattcaatgatatgtcatatttttatattaattt 78  Q
    |||||||||||| || |||  |||||||||||||||| || ||||||| |||||||||    
T  43485007 ttggatatgtacacaccatccaattattcaatgatatatcctatttttgtattaattt 43485064  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 57861 - 57795
Alignment:
Q  46 attcaatgatatgtcatatttttatattaatttgtttaagaataaaatcaaattttgaatgagtttt 112  Q
    |||||||  |||||||||||||||||| ||||| ||| | |||||| | ||||||||||||| ||||    
T  57861 attcaatattatgtcatatttttatatcaatttattttaaaataaatttaaattttgaatgaatttt 57795  T

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