View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9877_low_13 (Length: 240)
Name: NF9877_low_13
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9877_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 43755963 - 43756175
Alignment:
| Q |
12 |
ttgttactttacattctactttattagagatggcgtcaagattttgaggtgtctaaattgactgaagaagccatcaaagatatctctcaaactgaaaaag |
111 |
Q |
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| T |
43755963 |
ttgttactttacattctactttaatagagatggcgtcaagattttgaggtgtctgaattgactgaagaagccatcaaagatatctctcaaactgaaaaag |
43756062 |
T |
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| Q |
112 |
catatgtacatgactttctagatatcaacaacagacttgtgcttgtggtggaagcatcaaagcattttcctaaagtaagtgtagattttgttgtgattaa |
211 |
Q |
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| T |
43756063 |
catatgtacatgactttctagatatcaacaacagacctgtgcttgtggtggaagcatcaaagcattttcctaaagtaagtgtagattttgttgtgattaa |
43756162 |
T |
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| Q |
212 |
tcatagcatgtat |
224 |
Q |
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| T |
43756163 |
tcatagcatgtat |
43756175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 43760850 - 43761044
Alignment:
| Q |
2 |
ttttatgtacttgttactttacattctactttattagagatggcgtcaagattttgaggtgtctaaattgactgaagaagccatcaaagatatctctcaa |
101 |
Q |
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|||||||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| | | |||||| | ||||| |
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| T |
43760850 |
ttttatgtacttgttactttcccttctacattattagaaatggcgtcaagattttgaggtgtctaaattgaccgaagaatctgttaaagatgttgctcaa |
43760949 |
T |
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| Q |
102 |
actgaaaaagcatatgtacatgactttctagatatcaacaacagacttgtgcttgtggtggaagcatcaaagcattttcctaaagtaagtgtaga |
196 |
Q |
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| T |
43760950 |
actggaaaagcctatattcatgactttctagatatcaatgacagacctgtgcttgtggtggtcgcagcgaagcattttcctaaagtaagtgtaga |
43761044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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