View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9877_low_14 (Length: 220)
Name: NF9877_low_14
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9877_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 202
Target Start/End: Original strand, 7896191 - 7896381
Alignment:
| Q |
12 |
gtttggtggtgaattgaaagcttctgctgttactttggaatcggtcacaaagtccacattatcaaatttcatgtctgttaaccattgaatggcatgaaac |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7896191 |
gtttcgtggtgaattgaaagcttctgctgttactttggaatcggtcacaaagtccacattatcaaatttcatgtctgttaaccattgaatggcatgaaac |
7896290 |
T |
|
| Q |
112 |
agccccatggcttctccaacatcaacagcaagttgtgtgggaaatctccttgtttgcgcaagtacatacgtaccgttgtcatcacgcaaac |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
7896291 |
agccccatggcttctccaacatcaacagcaagttgtgtgggaaatctccttgtttgcgcaagtacatacgtgccgttgtcatcacacaaac |
7896381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 8565924 - 8565885
Alignment:
| Q |
38 |
ctgttactttggaatcggtcacaaagtccacattatcaaa |
77 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
8565924 |
ctgttactttggaatcagacacaaagtccacattatcaaa |
8565885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 8119029 - 8119067
Alignment:
| Q |
38 |
ctgttactttggaatcggtcacaaagtccacattatcaa |
76 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
8119029 |
ctgttactttggaatcagtcacaaaatccacattatcaa |
8119067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University