View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9877_low_15 (Length: 219)

Name: NF9877_low_15
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9877_low_15
NF9877_low_15
[»] chr6 (11 HSPs)
chr6 (19-96)||(30149909-30149985)
chr6 (30-124)||(24738710-24738801)
chr6 (30-74)||(24935060-24935104)
chr6 (30-71)||(30053821-30053862)
chr6 (29-74)||(24263314-24263359)
chr6 (30-79)||(29949454-29949503)
chr6 (30-79)||(29953251-29953300)
chr6 (30-79)||(30135519-30135568)
chr6 (29-65)||(29365992-29366028)
chr6 (29-65)||(29867041-29867077)
chr6 (29-65)||(29898465-29898501)
[»] scaffold0110 (1 HSPs)
scaffold0110 (25-96)||(43410-43480)
[»] chr8 (1 HSPs)
chr8 (19-124)||(9782928-9783031)
[»] scaffold0019 (1 HSPs)
scaffold0019 (30-79)||(125680-125729)
[»] chr4 (1 HSPs)
chr4 (30-74)||(44262155-44262199)
[»] scaffold0014 (2 HSPs)
scaffold0014 (44-79)||(140667-140702)
scaffold0014 (30-74)||(137767-137811)
[»] scaffold0086 (1 HSPs)
scaffold0086 (30-74)||(30880-30924)
[»] chr3 (1 HSPs)
chr3 (30-74)||(11991705-11991749)


Alignment Details
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 30149909 - 30149985
Alignment:
Q  19 aaagcgacagaaatgataaggcgctgaaacttcttcgtgaaatgattgctagaggtgtactcttaaagaataaaacta 96  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||| |||||| ||||||||    
T  30149909 aaagcgacagaaatgataaggcggtgaaatttattcgtgaaatgattgctagaggtctactc-taaagagtaaaacta 30149985  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 24738801 - 24738710
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggtgtactcttaaagaataaaactaatttgagatgctttctagttacagtttg 124  Q
    |||||||||||  || ||||||||||||||||||||||||||||| |||| |  ||||||||||| ||  ||||||||||| |||||||| ||||    
T  24738801 aatgataaggcagtggaacttcttcgtgaaatgattgctagaggtctactat--aagaataaaac-aaggtgagatgctttttagttacaatttg 24738710  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 24935060 - 24935104
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggt 74  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  24935060 aatgataaggcggtgaaacttctacgtgaaatgattgctagaggt 24935104  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 30053821 - 30053862
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctaga 71  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  30053821 aatgataaggcgctgacacttcttcgtgaaatgattgttaga 30053862  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 24263359 - 24263314
Alignment:
Q  29 aaatgataaggcgctgaaacttcttcgtgaaatgattgctagaggt 74  Q
    |||||||||||||  |||||||||||||||||||||| | ||||||    
T  24263359 aaatgataaggcggagaaacttcttcgtgaaatgattacaagaggt 24263314  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 29949503 - 29949454
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggtgtact 79  Q
    |||||||||||  | |||||||||||||||||||||| ||||||| ||||    
T  29949503 aatgataaggctgttaaacttcttcgtgaaatgattgttagaggtctact 29949454  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 29953300 - 29953251
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggtgtact 79  Q
    |||||||||||  | |||||||||||||||||||||| ||||||| ||||    
T  29953300 aatgataaggctgttaaacttcttcgtgaaatgattgttagaggtctact 29953251  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 30135519 - 30135568
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggtgtact 79  Q
    |||||||||||  ||||||||||| |||||||||||| ||||||| ||||    
T  30135519 aatgataaggcagtgaaacttctttgtgaaatgattgatagaggtctact 30135568  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 29366028 - 29365992
Alignment:
Q  29 aaatgataaggcgctgaaacttcttcgtgaaatgatt 65  Q
    |||||||||||||  ||||||||||||||||||||||    
T  29366028 aaatgataaggcggagaaacttcttcgtgaaatgatt 29365992  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 29867041 - 29867077
Alignment:
Q  29 aaatgataaggcgctgaaacttcttcgtgaaatgatt 65  Q
    |||||||||||||  ||||||||||||||||||||||    
T  29867041 aaatgataaggcggagaaacttcttcgtgaaatgatt 29867077  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 29898465 - 29898501
Alignment:
Q  29 aaatgataaggcgctgaaacttcttcgtgaaatgatt 65  Q
    |||||||||||||  ||||||||||||||||||||||    
T  29898465 aaatgataaggcggagaaacttcttcgtgaaatgatt 29898501  T

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Target: scaffold0110 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 43480 - 43410
Alignment:
Q  25 acagaaatgataaggcgctgaaacttcttcgtgaaatgattgctagaggtgtactcttaaagaataaaacta 96  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||||| ||||| |||||| ||||||||    
T  43480 acagaaatgataaggcggtgaaactgattcgtgaaatgattgctagaggtctactc-taaagagtaaaacta 43410  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 9782928 - 9783031
Alignment:
Q  19 aaagcgacagaaatgataaggcgctgaaacttcttcgtgaaatgattgctagaggtgtactcttaaagaataaaactaatttgagatgctttctagttac 118  Q
    ||||||||  ||||||||||||| ||||||||||| |||||||||||||||||||| |  || |||||| ||||||| |  ||||||||||||  |||||    
T  9782928 aaagcgaccaaaatgataaggcggtgaaacttctttgtgaaatgattgctagaggtctgttc-taaagagtaaaact-aggtgagatgctttccggttac 9783025  T
Q  119 agtttg 124  Q
    ||||||    
T  9783026 agtttg 9783031  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 125729 - 125680
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggtgtact 79  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||| ||||    
T  125729 aatgaaaaggcggagaaacttcttcgtgaaatgattgctagaggtctact 125680  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 44262199 - 44262155
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggt 74  Q
    ||||||||| || |||||||||||||||||||||||| |||||||    
T  44262199 aatgataagacggtgaaacttcttcgtgaaatgattgttagaggt 44262155  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 140667 - 140702
Alignment:
Q  44 gaaacttcttcgtgaaatgattgctagaggtgtact 79  Q
    ||||||||||||||||||||||||||||||| ||||    
T  140667 gaaacttcttcgtgaaatgattgctagaggtctact 140702  T

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Target: scaffold0014; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 137767 - 137811
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggt 74  Q
    ||||| ||||||  ||||||||||||||||||| |||||||||||    
T  137767 aatgaaaaggcggagaaacttcttcgtgaaatggttgctagaggt 137811  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 30924 - 30880
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggt 74  Q
    ||||| ||||||  ||||||||||||||||||||||| |||||||    
T  30924 aatgaaaaggcggagaaacttcttcgtgaaatgattgttagaggt 30880  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 11991705 - 11991749
Alignment:
Q  30 aatgataaggcgctgaaacttcttcgtgaaatgattgctagaggt 74  Q
    ||||| ||||||  ||||||||| |||||||||||||||||||||    
T  11991705 aatgaaaaggcggagaaacttctgcgtgaaatgattgctagaggt 11991749  T

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