View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9877_low_16 (Length: 213)
Name: NF9877_low_16
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9877_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 29593896 - 29593775
Alignment:
| Q |
74 |
tggctgcatgtactaaatcgggaagacacgtgattctgtcatgttactgttgggaggctaggaattaaaagtgggttggcaatgctttgtagtgaaaaac |
173 |
Q |
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| T |
29593896 |
tggctgcatgtactaaatcgggaagacccgtgattctgtcctgtaactattgg-aggttgggaattaaatgtgggttggcaatgctttgaagtgaaaaac |
29593798 |
T |
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| Q |
174 |
aatggtggttatcagcttcaagt |
196 |
Q |
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||||||||||| | ||||||||| |
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| T |
29593797 |
aatggtggttacctgcttcaagt |
29593775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 29600794 - 29600673
Alignment:
| Q |
74 |
tggctgcatgtactaaatcgggaagacacgtgattctgtcatgttactgttgggaggctaggaattaaaagtgggttggcaatgctttgtagtgaaaaac |
173 |
Q |
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|||||| ||||||||||||| ||||| |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| | |
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| T |
29600794 |
tggctgaatgtactaaatcgcaaagacccgtgattctgtcttgttactgttga-aggcttggaattaaaagtgggttggcaatgctttgaagtgaaacag |
29600696 |
T |
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| Q |
174 |
aatggtggttatcagcttcaagt |
196 |
Q |
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|||| |||||||||||||||||| |
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| T |
29600695 |
aatgttggttatcagcttcaagt |
29600673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 29752495 - 29752616
Alignment:
| Q |
74 |
tggctgcatgtactaaatcgggaagacacgtgattctgtcatgttactgttgggaggctaggaattaaaagtgggttggcaatgctttgtagtgaaaaac |
173 |
Q |
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| T |
29752495 |
tggctgcatgtactaaatcgcaaagacccgtgattctgtcttgttactgttga-aggcttggaattaaaagtgggttggcaatgctttaaagtgaaacag |
29752593 |
T |
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| Q |
174 |
aatggtggttatcagcttcaagt |
196 |
Q |
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|||| ||||||||||||| |||| |
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| T |
29752594 |
aatgttggttatcagcttgaagt |
29752616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 29752416 - 29752463
Alignment:
| Q |
17 |
aggtaacaactgtctgttaattggttgctgcaaattgcatgtagttat |
64 |
Q |
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| T |
29752416 |
aggtaacaactttctgttaattggttgctgcatattgcatgttgttat |
29752463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 29600878 - 29600837
Alignment:
| Q |
17 |
aggtaacaactgtctgttaattggttgctgcaaattgcatgt |
58 |
Q |
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| T |
29600878 |
aggtaacaactttctgttaattggttgctgcatattgcatgt |
29600837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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