View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9877_low_3 (Length: 455)

Name: NF9877_low_3
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9877_low_3
NF9877_low_3
[»] chr8 (1 HSPs)
chr8 (47-444)||(40391086-40391484)
[»] chr7 (5 HSPs)
chr7 (192-378)||(34706753-34706939)
chr7 (248-344)||(3312555-3312649)
chr7 (248-318)||(3310869-3310937)
chr7 (316-444)||(32945329-32945455)
chr7 (304-353)||(16250396-16250445)
[»] scaffold0101 (1 HSPs)
scaffold0101 (253-359)||(564-667)
[»] chr4 (3 HSPs)
chr4 (270-444)||(25126219-25126392)
chr4 (314-442)||(15706660-15706790)
chr4 (301-341)||(44277979-44278019)
[»] chr1 (1 HSPs)
chr1 (232-437)||(18513810-18514016)
[»] chr3 (4 HSPs)
chr3 (232-344)||(32657283-32657394)
chr3 (335-439)||(15777330-15777433)
chr3 (303-430)||(18705521-18705648)
chr3 (309-439)||(3290605-3290737)
[»] scaffold0505 (1 HSPs)
scaffold0505 (243-329)||(4709-4793)
[»] chr5 (1 HSPs)
chr5 (356-430)||(39435955-39436029)
[»] chr2 (3 HSPs)
chr2 (351-444)||(32623585-32623677)
chr2 (346-425)||(27386940-27387020)
chr2 (302-342)||(29601936-29601976)
[»] scaffold0281 (1 HSPs)
scaffold0281 (401-444)||(1911-1954)
[»] scaffold0009 (1 HSPs)
scaffold0009 (310-369)||(160400-160459)


Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 47 - 444
Target Start/End: Original strand, 40391086 - 40391484
Alignment:
Q  47 aacaagattattaatcgctaaaagtcaagccgatgcatctaatagtaaattgtgtcattaataaagctcacacgagcacataattagtttt-attttatt 145  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40391086 aacaagattattaattgctaaaagtcaagccgatgcatctaatagtaaattgtgtcattaataaagctcacacgagcacataattagtttttattttatt 40391185  T
Q  146 ttatcaaagttatcaagaacacaaacagccgcaaggaacacaacataaccacaaatttaacacatcagcatcatcaattaagaaataatcacaccaacaa 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40391186 ttatcaaagttatcaagaacacaaacagccgcaaggaacacaacataaccacaaatttaacacatcagcatcatcaattaagaaataatcacaccaacaa 40391285  T
Q  246 agtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatacaacccttag 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  40391286 agtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatataacccttac 40391385  T
Q  346 gatgaataaaactctcccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctcactattcatctttgtctct 444  Q
    |||||||||||||| ||||||| ||||||||||  |||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  40391386 gatgaataaaactcccccttacctctagttttgcgaaattgatggttttctaagttgaaatctctctttaggttcttctcgctattcatctttgtctct 40391484  T

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Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 192 - 378
Target Start/End: Original strand, 34706753 - 34706939
Alignment:
Q  192 aaccacaaatttaacacatcagcatcatcaattaagaaataatcacaccaacaaagtagagcacaaatttaacatctcaattcattaaaagattaagaaa 291  Q
    |||||| |||||||||||||| |||| | |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  34706753 aaccacgaatttaacacatcaacatcgtgaatttagaaacaatcacagcaacaaagtagaacacaaatttaacatctcaattcattaaaagattatgaaa 34706852  T
Q  292 acaaagaagaaaaacacaaacccttcactactcatatgtttatacaacccttaggatgaataaaactctcccttacttctagttttg 378  Q
    |||||||||||||||| |||||||||| ||||||||| || || ||| ||||| ||| |||||| ||| ||||||| ||||||||||    
T  34706853 acaaagaagaaaaacataaacccttcaatactcatatattcatccaatccttacgataaataaacctcccccttacctctagttttg 34706939  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 248 - 344
Target Start/End: Original strand, 3312555 - 3312649
Alignment:
Q  248 tagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatacaaccctta 344  Q
    |||||||||||| ||||||   |||||||||||||||   |||||||| |||||||||||||||||||||||||| || || || ||||||||||||    
T  3312555 tagagcacaaatataacata--aattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttcactacccacatattcatacaaccctta 3312649  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 3310869 - 3310937
Alignment:
Q  248 tagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttca 318  Q
    ||||||| |||||||||||   |||||||||||||||   |||||||| ||||||||||||||||||||||    
T  3310869 tagagcataaatttaacata--aattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttca 3310937  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 444
Target Start/End: Original strand, 32945329 - 32945455
Alignment:
Q  316 tcactactcatatgtttatacaacccttaggatgaataaaactctccc-ttacttctagttttgtaaaattgatggttttttaggttgaaatctctcttt 414  Q
    ||||||| |||||||| |||||||| ||| |||||||| ||||| ||| |||| ||||||||||  ||||||||| |||  || |||||||||||||  |    
T  32945329 tcactacccatatgttcatacaacc-ttatgatgaatataactccccccttacctctagttttgcgaaattgatgatttcctacgttgaaatctctc--t 32945425  T
Q  415 aggttcttctcactattcatctttgtctct 444  Q
    | ||||||||  |||||| |||||| ||||    
T  32945426 aagttcttctggctattcctctttgcctct 32945455  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 16250445 - 16250396
Alignment:
Q  304 aacacaaacccttcactactcatatgtttatacaacccttaggatgaata 353  Q
    |||||||||||||| |||| || ||||| |||||||||||| ||||||||    
T  16250445 aacacaaacccttcgctacccacatgttcatacaacccttatgatgaata 16250396  T

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Target: scaffold0101 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 253 - 359
Target Start/End: Complemental strand, 667 - 564
Alignment:
Q  253 cacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatacaacccttaggatgaat 352  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||   ||||||| |||||||    
T  667 cacaaatttaacatctcaattcattaaaagattaagaaaacgaagaagaaaaacacaaacccttcactacccatatgttcat---acccttacgatgaat 571  T
Q  353 aaaactc 359  Q
    |||||||    
T  570 aaaactc 564  T

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Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 270 - 444
Target Start/End: Complemental strand, 25126392 - 25126219
Alignment:
Q  270 aattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatgtttatacaacccttaggatgaata-aaact-ctcccttac 367  Q
    |||| |||||||||| |||||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||   ||||||| | ||| | ||| |||    
T  25126392 aatttattaaaagatcaagaaaacaaagaagaaaaacataaatccttcactacctatatgtttatacaaccctt---atgaatagagactccccccatac 25126296  T
Q  368 ttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctcactattcatctttgtctct 444  Q
     ||||||||||  ||||||||| |||  || ||| |||| ||||| |||||||||||| |||||| |||||| ||||    
T  25126295 ctctagttttgcgaaattgatgatttcctacgttcaaatttctctctaggttcttctcgctattcctctttgcctct 25126219  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 442
Target Start/End: Original strand, 15706660 - 15706790
Alignment:
Q  314 cttcactactcatatgtttatacaacccttaggatgaataaa-actctccc-ttacttctagttttgtaaaattgatggttttttaggttgaaatctctc 411  Q
    ||||||||||||| || | ||||||| |||| | |||||| | |||| ||| |||| ||||||||||  ||||||||| ||| ||| ||||||||||| |    
T  15706660 cttcactactcatgtgatcatacaactcttacggtgaatagagactcccccattacctctagttttgcgaaattgatgatttcttacgttgaaatctccc 15706759  T
Q  412 tttaggttcttctcactattcatctttgtct 442  Q
    ||||| |||||||| |||||| |||||||||    
T  15706760 tttagattcttctcgctattcctctttgtct 15706790  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 44278019 - 44277979
Alignment:
Q  301 aaaaacacaaacccttcactactcatatgtttatacaaccc 341  Q
    |||||||||||||||||||||| |||||||| ||| |||||    
T  44278019 aaaaacacaaacccttcactacccatatgttcatataaccc 44277979  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 232 - 437
Target Start/End: Complemental strand, 18514016 - 18513810
Alignment:
Q  232 aatcacaccaacaaagtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaa-gaagaaaaacacaaacccttcactactcatatgt 330  Q
    ||||||| ||||||| || |||| |||||||||||   |||| |||||||||| | ||||||||| |||||||| || ||||| ||||||||  ||||||    
T  18514016 aatcacaacaacaaattacagcataaatttaacatg--aatttattaaaagatcatgaaaacaaaagaagaaaatcataaacctttcactacctatatgt 18513919  T
Q  331 ttatacaacccttaggatgaataaa-act-ctcccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctcact 428  Q
    | |||||||||||| | |||||| | ||| | ||||||| | ||||||||  ||||||||| |||  || ||| |||||||||| |||||||||||||||    
T  18513918 tcatacaacccttatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctctctaggttcttctcact 18513819  T
Q  429 attcatctt 437  Q
    |||| ||||    
T  18513818 attcctctt 18513810  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 344
Target Start/End: Complemental strand, 32657394 - 32657283
Alignment:
Q  232 aatcacaccaacaaagtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaa-aaacacaaacccttcactactcatatgt 330  Q
    ||||||| |||| || |||||||||||||||||||   ||||||||||||||| | ||||||||||||||| ||||||| |  ||| ||||| |||||||    
T  32657394 aatcacaacaaccaattagagcacaaatttaacatg--aattcattaaaagatcatgaaaacaaagaagaagaaacacagattctttactacccatatgt 32657297  T
Q  331 ttatacaaccctta 344  Q
    | ||||||||||||    
T  32657296 tcatacaaccctta 32657283  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 439
Target Start/End: Complemental strand, 15777433 - 15777330
Alignment:
Q  335 acaacccttaggatgaataaaactctcccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctcactattcat 434  Q
    |||||||||| |||||||||||||| ||||||| ||||| |||| |||| ||||   ||  || | |||||||||||| |||||||||||| |||||| |    
T  15777433 acaacccttatgatgaataaaactcccccttacctctag-tttgcaaaagtgataaattcctacggtgaaatctctctctaggttcttctcgctattcct 15777335  T
Q  435 ctttg 439  Q
    |||||    
T  15777334 ctttg 15777330  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 430
Target Start/End: Complemental strand, 18705648 - 18705521
Alignment:
Q  303 aaacacaaacccttcactactcatatgtttatacaacccttaggatgaataaa-actctcccttacttctagttttgtaaaattgatggttttttaggtt 401  Q
    |||||||||||||||||||| | |||||| |||||||| ||| | | |||| | |||| ||| ||| |||||||||   ||||||||| |||  || | |    
T  18705648 aaacacaaacccttcactacccttatgttcatacaacc-ttatggtaaatagagactcccccatacctctagttttacgaaattgatgatttcatatggt 18705550  T
Q  402 gaaatctctctttaggttcttctcactat 430  Q
    ||||||||||| || ||||||||||||||    
T  18705549 gaaatctctctctacgttcttctcactat 18705521  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 439
Target Start/End: Original strand, 3290605 - 3290737
Alignment:
Q  309 aaacccttcactactcatatgtttatacaacccttaggatga---ataaaactctcccttacttctagttttgtaaaattgatggttttttaggttgaaa 405  Q
    |||||||||||||  |||||||| ||||| ||| || |||||   |||| |||| |||||||| |||||||||  ||||||||| |||  || | | |||    
T  3290605 aaacccttcactatccatatgttcatacagcccctatgatgatgaataagactcccccttact-ctagttttgcgaaattgatgatttcctacggttaaa 3290703  T
Q  406 tctctctttaggttcttctcactattcatctttg 439  Q
    || |||| |||||||||||| |||||| ||||||    
T  3290704 tccctctctaggttcttctcgctattcctctttg 3290737  T

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Target: scaffold0505 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 329
Target Start/End: Original strand, 4709 - 4793
Alignment:
Q  243 caaagtagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcatatg 329  Q
    |||| |||||||||||||||||||   ||||||| |||| |  | |||||||| |||||||||||||||||||||||||| ||||||    
T  4709 caaattagagcacaaatttaacatg--aattcatcaaaaaaacatgaaaacaaggaagaaaaacacaaacccttcactacccatatg 4793  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 39436029 - 39435955
Alignment:
Q  356 actctcccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctcactat 430  Q
    |||| ||||||| ||||||||||| ||||||||| |||  || | |||||||||||||||| ||||||| |||||    
T  39436029 actcccccttacctctagttttgtgaaattgatgatttcctacggtgaaatctctctttagattcttcttactat 39435955  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 444
Target Start/End: Complemental strand, 32623677 - 32623585
Alignment:
Q  351 ataaaactctcccttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctcactattcatctttgtctct 444  Q
    ||||||||| |||| || |||||||||| |||||||||| |||| || | |||||||||||| ||| ||||||||  ||||| |||||| ||||    
T  32623677 ataaaactccccct-acctctagttttgcaaaattgatgattttctacggtgaaatctctctctagattcttctcgttattcctctttgcctct 32623585  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 425
Target Start/End: Complemental strand, 27387020 - 27386940
Alignment:
Q  346 gatgaataaaactctcc-cttacttctagttttgtaaaattgatggttttttaggttgaaatctctctttaggttcttctc 425  Q
    |||||||||||| | || ||||| ||||||||||  ||||| ||| |||| || | |||||||||||| ||||||||||||    
T  27387020 gatgaataaaacccccctcttacctctagttttgcgaaattaatgattttctacggtgaaatctctctctaggttcttctc 27386940  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 29601936 - 29601976
Alignment:
Q  302 aaaacacaaacccttcactactcatatgtttatacaaccct 342  Q
    |||||| |||||||||||||| |||||||| ||||||||||    
T  29601936 aaaacaaaaacccttcactacccatatgttcatacaaccct 29601976  T

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Target: scaffold0281 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 1911 - 1954
Alignment:
Q  401 tgaaatctctctttaggttcttctcactattcatctttgtctct 444  Q
    |||||||||||| |||||||||||| |||||| |||||||||||    
T  1911 tgaaatctctctgtaggttcttctcgctattcttctttgtctct 1954  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 369
Target Start/End: Original strand, 160400 - 160459
Alignment:
Q  310 aacccttcactactcatatgtttatacaacccttaggatgaataaaactctcccttactt 369  Q
    ||||||||||||| || |||  || |||||||||| |||||||||||||| |||||||||    
T  160400 aacccttcactacccacatgagtaaacaacccttatgatgaataaaactcccccttactt 160459  T

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