View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9877_low_5 (Length: 414)
Name: NF9877_low_5
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9877_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 10598084 - 10597699
Alignment:
| Q |
16 |
cactctgactgggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtcccttcaaatgtagccgtgtca |
115 |
Q |
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| T |
10598084 |
cactccgactgggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtcccttcaaatgtagccgtgtct |
10597985 |
T |
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| Q |
116 |
tcatcaagcactccgactggaagctccttcaatgcatgcatatcagaatctaacccttcacttgcagaattgtcactgatatcatcattgttagctccca |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
10597984 |
tcatcaagcactccaactggaagctccttcaatgcatgcatatcagaatctaacccttcacttgcagaattgtcactgatattatcatcgttagctccca |
10597885 |
T |
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| Q |
216 |
caggtgattctttcaaagcagtcgtatcaagtttatcaaccacaataggaatgtcactgacctctgattttgatttgcattctgaatccgttttgtcaga |
315 |
Q |
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| T |
10597884 |
caggtgagtctttcaaagcagtggtatcaagtttatcaaccacaataggaatgtcgatgacctctgactttgatttgcattccaaatccgttttgtcaac |
10597785 |
T |
|
| Q |
316 |
aaaattacttgtggaatccaatgcatcagcagcaattacaggactataatcttcgttgattaatccatttggtagcattgtagtct |
401 |
Q |
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| T |
10597784 |
aagatcacttgtggaatccgatgcatcagcagccattacaggactgctatcctcattgattaatccatttggtagcattgtggtct |
10597699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 10598272 - 10598169
Alignment:
| Q |
26 |
gggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtcccttcaaatgtagccgtgtcatcatcaagca |
125 |
Q |
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| T |
10598272 |
gggagttctttaatgaatacctcatttccagcttgtacttcatttt---------cagaggtattagtctcttcagatgtagctgtgtcttcatcgagca |
10598182 |
T |
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| Q |
126 |
ctccgactggaag |
138 |
Q |
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| T |
10598181 |
ctccgactggaag |
10598169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 29 - 302
Target Start/End: Complemental strand, 53388700 - 53388427
Alignment:
| Q |
29 |
agttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtcccttcaaatgtagccgtgtcatcatcaagcactc |
128 |
Q |
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| T |
53388700 |
agttcttcaatgaatacctcgttttcatcacttacttcacttagtacattttcagatgtattagtctcttcaaatgtagccgtgtattcatcgagcactc |
53388601 |
T |
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| Q |
129 |
cgactggaagctccttcaatgcatgcatatcagaatctaacccttcacttgcagaattgtcactgatatcatcattgttagctcccacaggtgattcttt |
228 |
Q |
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| T |
53388600 |
cgactggaagctcctacaatgcatgcatatcagaatctaacccttcacttgaagaatcatcactaatatcatcattgtttgctcccacgggtaattcttt |
53388501 |
T |
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| Q |
229 |
caaagcagtcgtatcaagtttatcaaccacaataggaatgtcactgacctctgattttgatttgcattctgaat |
302 |
Q |
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| T |
53388500 |
caaagcagtcgtatcaaatttatcaaccacaataggaatgtcgctgacctctgattttgatttgcattctgaat |
53388427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 53388425 - 53388377
Alignment:
| Q |
350 |
attacaggactataatcttcgttgattaatccatttggtagcattgtag |
398 |
Q |
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| T |
53388425 |
attacaggactacaatcctcattgattaatccatctggtagcattgtag |
53388377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 53388805 - 53388761
Alignment:
| Q |
23 |
actgggagttcttcaatgaatacctcgttttcagcatgtacttca |
67 |
Q |
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|||||||||||||||||||||||||| ||| | || ||||||||| |
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| T |
53388805 |
actgggagttcttcaatgaatacctcatttccggcttgtacttca |
53388761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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