View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9877_low_6 (Length: 397)
Name: NF9877_low_6
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9877_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 6395249 - 6395602
Alignment:
| Q |
16 |
actagtttaagagtttatagtgttactgctcctatagtatatctatcatataaaatgcatatgcaaaa-aataggtgcattataacagttgatacatgtt |
114 |
Q |
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| T |
6395249 |
actagtttaagagtttatagtgttactgctcctatagtatatatctcatataaaatgcatatgcaaaaaaataggtacattataacagttgatacatgtt |
6395348 |
T |
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| Q |
115 |
agccaactatgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattcttctcattctt |
214 |
Q |
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| T |
6395349 |
agccaactatgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattcttctcattctt |
6395448 |
T |
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| Q |
215 |
gcgggcacctccctctcactcaccattcaattagtaagtttttcgattcaaattctttcattttgcatttaggaatttaggatcatagatcatcatttca |
314 |
Q |
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| T |
6395449 |
gcgggcacctccctctcactcaccattcaattagtaagtttttcgattcaaattctttcattttgcatttaggaatttaggatcatagatcatcatttca |
6395548 |
T |
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| Q |
315 |
gattatgctctatatagaacccttagatctagtgatgagaaaggtaagaaatta |
368 |
Q |
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| T |
6395549 |
gattatgctctatatagaacccttagatctagtgatgagaaaggtaagaaatta |
6395602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 43597806 - 43597889
Alignment:
| Q |
124 |
tgaaatttcttcccattctcatcaatttcttctgaatttgaaactggtttttataatttgtgtgttcaatttgcagattcttct |
207 |
Q |
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| T |
43597806 |
tgaaatttcttaccattctcatcaatttcttctgaatttgaagctaatttttctagtatatgtgttcaatttgtagattcttct |
43597889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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