View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9877_low_7 (Length: 396)
Name: NF9877_low_7
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9877_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 40207425 - 40207721
Alignment:
| Q |
1 |
tcatttaggatctttgccaccttttcttttggttttggctggggatttgaagagtgtggatcataggtggaatcaacacggacttggaggtgataatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207425 |
tcatttaggatctttgccaccttttcttttggttttggctggggatttgaagagtgtggatcataggtggaatcaacacggacttggaggtgataatctt |
40207524 |
T |
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| Q |
101 |
gaaggaaaatgtaggaatttgcatcctggtcctattagtttgcttcattggagtggcaaaggaaagccttggttgaggttggattcaaggagaccttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207525 |
gaaggaaaatgtaggaatttgcatcctggtcctattagtttgcttcattggagtggcaaaggaaagccttggttgaggttggattcaaggagaccttgtt |
40207624 |
T |
|
| Q |
201 |
ctgttgatcacctatgggcaccttatgatctctatcgtccaaacactcattctttggaagaatgagttgttgacaaagcgaacgggggaggaggagg |
297 |
Q |
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| T |
40207625 |
ctgttgatcacctatgggcaccttatgatctctatggtccaaacactcattctttggaagaatgagttgttgacaaagcgaacgggggaggaggagg |
40207721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 40207770 - 40207806
Alignment:
| Q |
329 |
aagaggtgagtaattttaacaatttcatttcttaata |
365 |
Q |
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| T |
40207770 |
aagaggtgagtacttttaacaatttcatttcttaata |
40207806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37500925 - 37500684
Alignment:
| Q |
1 |
tcatttaggatctttgccaccttttcttttggttttggctggggatttgaagagtgtggatcataggtggaatcaacacggacttggaggtgataatctt |
100 |
Q |
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|||||| || |||||||| ||||||||| | |||||||||||||| | ||| ||||||||||||||||||||||||| || | ||||| || ||| || |
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| T |
37500925 |
tcatttgggttctttgcctccttttcttcttgttttggctggggagataaagggtgtggatcataggtggaatcaacatggtttaggaggggacaatatt |
37500826 |
T |
|
| Q |
101 |
gaaggaaaatgtaggaatttgcatcctggtcctattagtttgcttcattggagtggcaaaggaaagccttggttgaggttggattcaaggagaccttgtt |
200 |
Q |
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||||| |||||||||| | | |||||||| ||| |||||||||||||||||||||| || || || |||||||| ||||||||||| |||| ||||||| |
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| T |
37500825 |
gaaggtaaatgtaggagtcttcatcctgggcctgttagtttgcttcattggagtgggaagggtaaaccttggttaaggttggattcgaggaatccttgtt |
37500726 |
T |
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| Q |
201 |
ctgttgatcacctatgggcaccttatgatctctatcgtccaa |
242 |
Q |
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| T |
37500725 |
ccgttgatcatctttgggcaccttacgatctctatcgtccaa |
37500684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 48999286 - 48999151
Alignment:
| Q |
56 |
gtggatcataggtggaatcaacacggacttggaggtgataatcttgaaggaaaatgtaggaatttgcatcctggtcctattagtttgcttcattggagtg |
155 |
Q |
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||||||||||| ||||| ||||| || | || || ||||| ||||||| |||||||| | ||| || ||||||||||||||||| | |||||||||| |
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| T |
48999286 |
gtggatcatagatggaaccaacatggtttaggtggagataacattgaaggtaaatgtagaagtttacaccctggtcctattagtttattgcattggagtg |
48999187 |
T |
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| Q |
156 |
gcaaaggaaagccttggttgaggttggattcaagga |
191 |
Q |
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| T |
48999186 |
gaaaaggtaaaccatggttgaggttggattcaagga |
48999151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 15964350 - 15964237
Alignment:
| Q |
59 |
gatcataggtggaatcaacacggacttggaggtgataatcttgaa-ggaaaatgtaggaatttgcatcctggtcctattagtttgcttcattggagtggc |
157 |
Q |
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|||||||| ||||||||||| |||||||| ||||||||| ||||| || ||||| |||||||||||||||| ||||||| | ||||||||||| |
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| T |
15964350 |
gatcatagatggaatcaacatggacttggtggtgataat-ttgaatggtgtttgtagatctttgcatcctggtcctgttagtttattgcattggagtgga |
15964252 |
T |
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| Q |
158 |
aaaggaaagccttgg |
172 |
Q |
| |
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|||||||| |||||| |
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| T |
15964251 |
aaaggaaaaccttgg |
15964237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 52164015 - 52163974
Alignment:
| Q |
56 |
gtggatcataggtggaatcaacacggacttggaggtgataat |
97 |
Q |
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| T |
52164015 |
gtggatcataggtggaatcaacatggacttggtggtgataat |
52163974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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