View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9877_low_8 (Length: 388)
Name: NF9877_low_8
Description: NF9877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9877_low_8 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 45187972 - 45187775
Alignment:
| Q |
18 |
attgataagccctagtttttcttcagtgtattataacctagtctttgttattcaagtgtattggatgagccaaatttatctgtgatatcgactagttttt |
117 |
Q |
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| T |
45187972 |
attgataagccctagttt--cttcagtgtattataacctagtctttgttattcaagtgtattggatgagccaaatttatctgtgatatcgactagttttt |
45187875 |
T |
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| Q |
118 |
tagagcaagttttttctacttattttgactaacaaaatattgttatcatattatttagtttgattttaatttgcgttgaatttcattcacatagattcta |
217 |
Q |
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| T |
45187874 |
tagagcaagttttttctacttattttgactaacaaaatattgttatcatattatttagtttgattttaatttgcgttgaatttcattcacatagattcta |
45187775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 252 - 388
Target Start/End: Complemental strand, 45187744 - 45187608
Alignment:
| Q |
252 |
cagttgatatatatctgatttacctaacataaacagttcggaagagtggtttgctccatttatgagaatgttctgcattgtgtgccaataactttgctct |
351 |
Q |
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| T |
45187744 |
cagttgatatatatctgatttccctaacataaacagttcagaagagtggtttgctccatttatgagaatgttctgcattgtgtgccaataactttgctct |
45187645 |
T |
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| Q |
352 |
ttgcatacaactccattcgttgagagtgtcctttgct |
388 |
Q |
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| T |
45187644 |
ttgcatacaactccattcgttgagagtgtcctttgct |
45187608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 341 - 384
Target Start/End: Original strand, 23600606 - 23600649
Alignment:
| Q |
341 |
aactttgctctttgcatacaactccattcgttgagagtgtcctt |
384 |
Q |
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| T |
23600606 |
aactttgttctttgcatacaactccattcgttgagagtgtcctt |
23600649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 371
Target Start/End: Original strand, 6352882 - 6352912
Alignment:
| Q |
341 |
aactttgctctttgcatacaactccattcgt |
371 |
Q |
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| T |
6352882 |
aactttgctctttgcatacaactccattcgt |
6352912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Original strand, 33978635 - 33978664
Alignment:
| Q |
340 |
taactttgctctttgcatacaactccattc |
369 |
Q |
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| T |
33978635 |
taactttgctctttgcatacaactccattc |
33978664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 369
Target Start/End: Complemental strand, 31802100 - 31802071
Alignment:
| Q |
340 |
taactttgctctttgcatacaactccattc |
369 |
Q |
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| T |
31802100 |
taactttgctctttgcatacaactccattc |
31802071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 13688 - 13732
Alignment:
| Q |
343 |
ctttgctctttgcatacaactccattcgttgagagtgtcctttgc |
387 |
Q |
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| T |
13688 |
ctttgctcgttgcatacaactccattcatttagtgtgtcctttgc |
13732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 11629125 - 11629081
Alignment:
| Q |
343 |
ctttgctctttgcatacaactccattcgttgagagtgtcctttgc |
387 |
Q |
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| T |
11629125 |
ctttgctcgttgcatacaactccattcatttagtgtgtcctttgc |
11629081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 34753145 - 34753189
Alignment:
| Q |
343 |
ctttgctctttgcatacaactccattcgttgagagtgtcctttgc |
387 |
Q |
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| T |
34753145 |
ctttgctcgttgcatacaactccattcatttagtgtgtcctttgc |
34753189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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