View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9878_high_2 (Length: 376)
Name: NF9878_high_2
Description: NF9878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9878_high_2 |
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| [»] scaffold0035 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 20687104 - 20687456
Alignment:
| Q |
19 |
tattttgtatatctactctgctgcagggataaaagaaatatcagtttgccactacatcagccggaggagtttcgagctttaatgcacagctgttttgata |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
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| T |
20687104 |
tattttgtatatctactctactgcagggataaaagaaatatcagtttgccactacatcagccggaggagttgcgagcttgaatgcacaactgttttgata |
20687203 |
T |
|
| Q |
119 |
gcctgattgttacacgagcagaggaagttgtctagcacagtctggggaatttcgtgtggatgctcatgatggtttgtggttggtttaaatgatttttgcg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20687204 |
gcctgattgttacacgagcagaggaagttgtctagcacagtctggagaatttcgtgtggatgctcatgatggtttgtggttggtttcaatgatttttgcg |
20687303 |
T |
|
| Q |
219 |
gtgttgtattgggaggtatgatgagctttttatcaagttttcgagaaataagtggtacgaggttttgtttcaagc------------cactatgaaagtt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20687304 |
gtgttgtattgggaggtatgatgagctttttatcaagttttcgagaaataagtggtacgaggttttgtttcaagccactatgaaaatcactatgaaagtt |
20687403 |
T |
|
| Q |
307 |
gcagctggtgttctcttggtaaatcgagaaggactatggaaactaggtgatgt |
359 |
Q |
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| T |
20687404 |
gcagctggtgttctcttggtaaatcgagaaggactatggaaactaggtgatgt |
20687456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 147 - 303
Target Start/End: Complemental strand, 1748006 - 1747852
Alignment:
| Q |
147 |
tgtctagcacagtctggggaatttcgtgtggatgctcatgatggtttgtggttggtttaaatgatttttgcggtgttgtattgggaggtatgatgagctt |
246 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||| |
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| T |
1748006 |
tgtctagcacagtctggggaatctcatgtggatgctcatgatggtttgtggttggtttcaatgatttttgcggtattgtgttgtgaggtatgatgagctt |
1747907 |
T |
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| Q |
247 |
tttatcaagttttcgagaaataagtggtacgaggttttgtttcaagccactatgaaa |
303 |
Q |
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||||||||||||| |||||||||||||| || |||| |||| |||||||||||||| |
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| T |
1747906 |
tttatcaagttttggagaaataagtggtgcggggttgtgtt--aagccactatgaaa |
1747852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 1748157 - 1748049
Alignment:
| Q |
19 |
tattttgtatatctactctgctgcagggataaaagaaatatcagtttgccactacatcagccggaggagtttcgagctttaatgcacagctgttttgata |
118 |
Q |
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||||||||||||||| | |||||||| | | ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| || |||||||||| |
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| T |
1748157 |
tattttgtatatctattgcgctgcaggaa-agaagaaatatcagtttgccactacatcagctggaggagttgcgagcttgaatgcgcaactgttttgatg |
1748059 |
T |
|
| Q |
119 |
gcctgattgt |
128 |
Q |
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|||||||||| |
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| T |
1748058 |
gcctgattgt |
1748049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 1747837 - 1747783
Alignment:
| Q |
306 |
tgcagctggtgttctcttggtaaatcgagaaggactatggaaact-aggtgatgt |
359 |
Q |
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|||||||||||||||||| |||||| ||||||||| |||||||| ||||||||| |
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| T |
1747837 |
tgcagctggtgttctcttagtaaattcagaaggactgtggaaactaaggtgatgt |
1747783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 147 - 359
Target Start/End: Complemental strand, 42382913 - 42382702
Alignment:
| Q |
147 |
tgtctagcacagtctggggaatttcgtgtggatgctcatgatggtttgtggttggtttaaatgatttttgcggtgttgtattgggaggtatgatgagctt |
246 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |
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| T |
42382913 |
tgtctagcacagtctggggaatctcatgtggatgctcatgatggtttgtggttggtttcaatgatttttgcggtgttgtgttgtgaggtatgatgagctt |
42382814 |
T |
|
| Q |
247 |
tttatcaagttttcgagaaataagtggtacgaggttttgtttcaagccactatgaaagttgcagctggtgttctcttggtaaatcgagaaggactatgga |
346 |
Q |
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||||||||||||| |||||||||||||| || |||| |||| ||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||| |
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| T |
42382813 |
tttatcaagttttggagaaataagtggtgcggggttgtgtt--aagccactatgaaagctgcagctggtgttctcttagtaaattcagaaggactgtgga |
42382716 |
T |
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| Q |
347 |
aact-aggtgatgt |
359 |
Q |
| |
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|||| ||||||||| |
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| T |
42382715 |
aactaaggtgatgt |
42382702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 42383064 - 42382956
Alignment:
| Q |
19 |
tattttgtatatctactctgctgcagggataaaagaaatatcagtttgccactacatcagccggaggagtttcgagctttaatgcacagctgttttgata |
118 |
Q |
| |
|
||||||||||||||| | |||||||| | | ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| || |||||||||| |
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| T |
42383064 |
tattttgtatatctattgcgctgcaggaa-agaagaaatatcagtttgccactacatcagcaggaggagttgcgagcttgaatgcgcaactgttttgatg |
42382966 |
T |
|
| Q |
119 |
gcctgattgt |
128 |
Q |
| |
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|||||||||| |
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| T |
42382965 |
gcctgattgt |
42382956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 147 - 287
Target Start/End: Complemental strand, 84431 - 84291
Alignment:
| Q |
147 |
tgtctagcacagtctggggaatttcgtgtggatgctcatgatggtttgtggttggtttaaatgatttttgcggtgttgtattgggaggtatgatgagctt |
246 |
Q |
| |
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|||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| |
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| T |
84431 |
tgtctagcacagtctggggaatctcatgtggatggtcatgatggtttgtggttggtttcaatgatttttgcggtgttgtgttgtgaggtatgatgagctt |
84332 |
T |
|
| Q |
247 |
tttatcaagttttcgagaaataagtggtacgaggttttgtt |
287 |
Q |
| |
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||||||||||||| |||||||||||||| || |||| |||| |
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| T |
84331 |
tttatcaagttttggagaaataagtggtgcggggttgtgtt |
84291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 84582 - 84474
Alignment:
| Q |
19 |
tattttgtatatctactctgctgcagggataaaagaaatatcagtttgccactacatcagccggaggagtttcgagctttaatgcacagctgttttgata |
118 |
Q |
| |
|
||||||||||||||| | |||||||| | | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||| |
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| T |
84582 |
tattttgtatatctattgcgctgcaggaa-agaagaaatatcagtttgccactacatcagccggaggagttgcgagcttgaatgcgcaactgttttgatg |
84484 |
T |
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| Q |
119 |
gcctgattgt |
128 |
Q |
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|||||||||| |
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| T |
84483 |
gcctgattgt |
84474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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