View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9878_high_3 (Length: 331)

Name: NF9878_high_3
Description: NF9878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9878_high_3
NF9878_high_3
[»] chr2 (2 HSPs)
chr2 (13-331)||(43416553-43416871)
chr2 (234-316)||(43401885-43401966)
[»] chr4 (2 HSPs)
chr4 (18-72)||(32992636-32992690)
chr4 (15-72)||(53475539-53475596)
[»] chr3 (3 HSPs)
chr3 (14-72)||(5166448-5166506)
chr3 (15-73)||(32651435-32651493)
chr3 (15-60)||(3055015-3055060)
[»] chr1 (2 HSPs)
chr1 (14-72)||(31605846-31605904)
chr1 (14-67)||(9570663-9570716)
[»] chr8 (1 HSPs)
chr8 (15-71)||(18897187-18897243)


Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 43416871 - 43416553
Alignment:
Q  13 tatggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctctggagacatggttagtccgattggtgtttgtgatacatag 112  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43416871 tatggtgttggtttgggaacttggagtgcgctcttcctcaacatctcaagttcgattctctggagacatggttagtccgattggtgtttgtgatacatag 43416772  T
Q  113 tgtgggagagggttagttaagctgtgcttcagatataatactctattgtcttgtcacttcagtatggcagcataagaattaggaataaaggaaagaatgc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43416771 tgtgggagagggttagttaagctgtgcttcagatataatactctattgtcttgtcacttcagcatggcagcataagaattaggaataaaggaaagaatgc 43416672  T
Q  213 ataaagaatctcttgtgcaacacttctttctcctatgataggagccaactacacttgtttctgtgattgcaatagaaagaaatgacgaggaccactgaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43416671 ataaagaatctcttgtgcaacacttctttctcctatgataggagccaactacacttgtttctgtgattgcaatagaaagaaatgacgaggaccactgaga 43416572  T
Q  313 tgcaatacaaaaattttat 331  Q
    |||||||||||||||||||    
T  43416571 tgcaatacaaaaattttat 43416553  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 43401966 - 43401885
Alignment:
Q  234 acttctttctcctatgataggagccaactacacttgtttctgtgattgcaatagaaagaaatgacgaggaccactgagatgca 316  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||  |||||||    
T  43401966 acttctttctcctatgataggagccaaatacacttatttttgtgattgc-atagaaagaaatgacgaggaccaccaagatgca 43401885  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 32992636 - 32992690
Alignment:
Q  18 tgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc 72  Q
    |||||| |||||||||||||||| |||  |||||||| |||||| ||||||||||    
T  32992636 tgttggcttgggaccttggagtgtgctcctcctcaaggtctcaagttcgattctc 32992690  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 53475596 - 53475539
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc 72  Q
    |||||||||||||||||||||||||| | | ||||||||  | ||| |||||||||||    
T  53475596 tggtgttggtttgggaccttggagtgtgatcttcctcaaagtttcagattcgattctc 53475539  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 5166448 - 5166506
Alignment:
Q  14 atggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc 72  Q
    ||||||||| |||| |||||||||||| |||  ||||||||||||||  ||||||||||    
T  5166448 atggtgttgatttgagaccttggagtgtgctgctcctcaagatctcaggttcgattctc 5166506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 32651493 - 32651435
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctct 73  Q
    |||| |||| ||||||||| |||||| |||  |||||||||||||| ||||||||||||    
T  32651493 tggtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcgattctct 32651435  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 3055015 - 3055060
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctca 60  Q
    ||||||||| |||||||||||||| | |||| ||||||||||||||    
T  3055015 tggtgttggcttgggaccttggagcgtgcttctcctcaagatctca 3055060  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 31605904 - 31605846
Alignment:
Q  14 atggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattctc 72  Q
    |||||||||| ||||||||||| |||| |||  |||||||| |||||| ||||||||||    
T  31605904 atggtgttggcttgggaccttgaagtgtgctcctcctcaaggtctcaagttcgattctc 31605846  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 9570663 - 9570716
Alignment:
Q  14 atggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcga 67  Q
    |||||||||| ||| |||||||||||| ||| ||||||||| ||||| ||||||    
T  9570663 atggtgttggcttgagaccttggagtgtgctcttcctcaaggtctcagattcga 9570716  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 18897187 - 18897243
Alignment:
Q  15 tggtgttggtttgggaccttggagtgcgcttttcctcaagatctcaaattcgattct 71  Q
    |||||||||||||||||||| ||||| |||  |||||||| |||||  |||||||||    
T  18897187 tggtgttggtttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattct 18897243  T

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