View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9878_low_1 (Length: 433)
Name: NF9878_low_1
Description: NF9878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9878_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 41037737 - 41038157
Alignment:
| Q |
1 |
tcaactaactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |
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| T |
41037737 |
tcaactaactgatggattgatcttctttattgcaccacaagacactgtgattccacccaattcagaaagtcaatattttggagtagttgattcaaagaat |
41037836 |
T |
|
| Q |
101 |
gcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037837 |
gcttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcga |
41037936 |
T |
|
| Q |
201 |
ccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcat |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41037937 |
ccaagatcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcat |
41038036 |
T |
|
| Q |
301 |
acatgccaatggcaaaattgttaccattgcttacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41038037 |
acatgccaatggcaaaattgttaccattgctgacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcagtaact |
41038136 |
T |
|
| Q |
401 |
ggtataccgcatgatgtccat |
421 |
Q |
| |
|
|||||| | |||||| ||||| |
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|
| T |
41038137 |
ggtatagcacatgatatccat |
41038157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 403
Target Start/End: Original strand, 41065933 - 41066323
Alignment:
| Q |
7 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
106 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||| ||||| ||||||||||||| ||| ||||| |
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|
| T |
41065933 |
aactgatggtttggtcttctttattgcaccacaagacactaagattccacccaactcagaaagtcaatatcttggagtagttgattcaaaaaatacttac |
41066032 |
T |
|
| Q |
107 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
41066033 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgaaacatattggaatcgatgtcaactctttaatttctctcaaga |
41066132 |
T |
|
| Q |
207 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgc |
306 |
Q |
| |
|
|||| || ||||||| | ||||| |||||||| | ||||||||| ||| ||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
41066133 |
ccgtgaaa------tgggaattcgcgagtggatcattgactaaagtaagtaaagcatatgactcttcctctaacacattgagtgttgttgtcacttatgc |
41066226 |
T |
|
| Q |
307 |
caatggcaaaattgttaccattgcttacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggt |
403 |
Q |
| |
|
|||||| ||| || |||||||||| | || |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
41066227 |
caatggaaaattttctaccattgctcaaatcgttgatttgaaagctgtgctccccaacaaggttaggtttggtctatctggtgcttcaataactggt |
41066323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 7 - 401
Target Start/End: Original strand, 41043785 - 41044173
Alignment:
| Q |
7 |
aactgatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttac |
106 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||| ||||||||||||| ||||| || | | ||||||| |||||||| | | ||||||||| |
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|
| T |
41043785 |
aactgatggagtgatcttttttattgcaccacaagacactgtgattccaccccactcaacaagtgcacgttttggagtagttgatatagaaaatgcttac |
41043884 |
T |
|
| Q |
107 |
aatcaatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaaga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | |||||||| |||| | ||||||||||||||| |||||||| ||||||||| ||||| |
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|
| T |
41043885 |
aatcaatttgttggtgtagagtttgacctttataccaatattcttgatcccaatatgaaacatattggaatcgatatcaactctttaatttcgagcaaga |
41043984 |
T |
|
| Q |
207 |
tcgtggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgc |
306 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| |||||||||| |||||||||||| ||||||||| |||||||||||| |||||| ||| |
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|
| T |
41043985 |
tcgtggaatggg------aatgggtgagtggatcattgactcaagtaagtgtagcctatgactttccctctaagacattgagtgttcttgtcacttatga |
41044078 |
T |
|
| Q |
307 |
caatggcaaaattgttaccattgcttacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactg |
401 |
Q |
| |
|
|||| ||||||||| |||| ||||| | ||| ||||||||||||| ||||||||||||||| ||||| |||||||| ||| |||||||||||||| |
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|
| T |
41044079 |
caatcgcaaaattgctacccttgctcaaataattgatttgaaaaccgtgctccccaacacgattaggcttggtctagctggtgcttcaataactg |
41044173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 41074111 - 41074145
Alignment:
| Q |
98 |
aatgcttacaatcaatttgttggtgtagagtttga |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
41074111 |
aatgcttacaatcaatttgttggtgtagagtttga |
41074145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 41047360 - 41047304
Alignment:
| Q |
90 |
attcaaagaatgcttacaatcaatttgttggtgtagagtttgacctttatcccaata |
146 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
41047360 |
attcaaataatgcttttaataaatttgttggtgtagagtttgacacttatgccaata |
41047304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 403
Target Start/End: Complemental strand, 8496198 - 8495812
Alignment:
| Q |
11 |
gatggattgatcttctttattgcaccacaagacagtgtgattccacccaactcagaaaatcaatattttggattagttgattcaaagaatgcttacaatc |
110 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || | || ||||| ||||||||||||| | | ||||||||| |
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|
| T |
8496198 |
gatggattggtcttctttattgcaccacaagacactgtgattccacccaactcagaaagtctacatcttggagtagttgattcaaaaagttcttacaatc |
8496099 |
T |
|
| Q |
111 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatccctatatttaccatattggaatcgatgtcaactctataatttcgaccaagatcgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||| ||| |
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|
| T |
8496098 |
aatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgagacatattggaatcgatgtcaactctttaatttctctcaagaccgt |
8495999 |
T |
|
| Q |
211 |
ggaatgggattgggaatgggtgagtgaatcattgaatcaagtaagtatagcctatgactctccctctaacacattgagtgttgttgtcatacatgccaat |
310 |
Q |
| |
|
| ||||| ||| | ||||| |||||||| | ||||||| ||||| ||||||||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
8495998 |
------gaattggcaatttgcgagtggatcattgactaaagtaagcatagcttatgactcttcctcaaacacattgagtgttgttgtcacttatgccaat |
8495905 |
T |
|
| Q |
311 |
ggcaaaattgttaccattgcttacatagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggt |
403 |
Q |
| |
|
|| ||| || ||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8495904 |
ggaaaattttccaccattgctcaaatagttgatttgaaaacagtgctccccaacaaggttaggtttggtctatctggtgcttcaataactggt |
8495812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 335 - 403
Target Start/End: Complemental strand, 8488368 - 8488300
Alignment:
| Q |
335 |
atagttgatttgaaaactgtgctccccaacacggttaggtttggtctatctgctgcttcaataactggt |
403 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8488368 |
atagttgatttgaaaacagtgctccctaacaaggttaggtttggtctatctggtgcttcaataactggt |
8488300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 21489359 - 21489406
Alignment:
| Q |
249 |
aagtaagtatagcctatgactctccctctaacacattgagtgttgttg |
296 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21489359 |
aagtaagtataatctatgactctccctctaacacattgagtgttgttg |
21489406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 21482869 - 21482904
Alignment:
| Q |
98 |
aatgcttacaatcaatttgttggtgtagagtttgac |
133 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21482869 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21482904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 21493021 - 21493056
Alignment:
| Q |
98 |
aatgcttacaatcaatttgttggtgtagagtttgac |
133 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21493021 |
aatgctttcaatcaatttgttggtgtagagtttgac |
21493056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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