View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9878_low_4 (Length: 240)
Name: NF9878_low_4
Description: NF9878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9878_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 10255099 - 10254877
Alignment:
| Q |
1 |
tgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtat |
100 |
Q |
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| T |
10255099 |
tgcggtgacagagccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtat |
10255000 |
T |
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| Q |
101 |
ttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccac |
200 |
Q |
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| T |
10254999 |
ttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccatcaccgtcgaagaggtggtagggtccac |
10254900 |
T |
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| Q |
201 |
gtggaaggaactgtgggtttggt |
223 |
Q |
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| T |
10254899 |
gtggaaggaactgtgggtttggt |
10254877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 10230739 - 10230948
Alignment:
| Q |
14 |
ccacgtgcagcagaagctataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaa |
113 |
Q |
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| T |
10230739 |
ccacgtgccgctaaagcaataagcgagttgaaaccagaaaacacgtttgggataagttggtgaccagctttgttttcaattttgtacttgtaggttttta |
10230838 |
T |
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| Q |
114 |
cgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactg |
213 |
Q |
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| T |
10230839 |
cataacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcaccgtcaaagagatggtagggtccacgtggaaggaactg |
10230938 |
T |
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| Q |
214 |
tgggtttggt |
223 |
Q |
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| T |
10230939 |
tgggtttggt |
10230948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 10239537 - 10239728
Alignment:
| Q |
32 |
ataagcgagttgaaaccagaaaacacgtttgggataagttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtg |
131 |
Q |
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| T |
10239537 |
ataagcgagttgaaaccagaaaacacgtttgggagaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtg |
10239636 |
T |
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| Q |
132 |
tagcttttccgtttgagattgtaatggcgtgaagcatgccgtcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggt |
223 |
Q |
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| T |
10239637 |
tggcttttccgtttgtgattttaacagcatgaagcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggt |
10239728 |
T |
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