View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9878_low_5 (Length: 227)
Name: NF9878_low_5
Description: NF9878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9878_low_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10255341 - 10255115
Alignment:
| Q |
1 |
cggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10255341 |
cggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttgga |
10255242 |
T |
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| Q |
101 |
tatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaacc |
200 |
Q |
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| T |
10255241 |
tatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaacc |
10255142 |
T |
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| Q |
201 |
aatgccgttagaaggattgtattgtcc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
10255141 |
aatgccgttagaaggattgtattgtcc |
10255115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 10239278 - 10239473
Alignment:
| Q |
15 |
ttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttggatatcaccgtttggc |
114 |
Q |
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||||||||||||| ||||||||| ||||| || |||||| ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10239278 |
ttcacctgtgtcggagtcaattttaggatgcgccgtcatattcatgaagagtttgccgttaaaatcataacggcctattgtttggatatcaccgtttggt |
10239377 |
T |
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| Q |
115 |
gtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaaccaatgccgtta |
210 |
Q |
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| T |
10239378 |
gtaactttgatttcataaggaagatctgattctcctaaagcaaaaagacggttgccaaacagagccaaacttgtgttgatcaatccaatgccgtta |
10239473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 10230484 - 10230695
Alignment:
| Q |
1 |
cggaaagcaaaagtttcacctgtgtcgccgtcaattttcggatgtgcagtcatactcatggagagtttaccgttaaaatcataacggccaattgtttgga |
100 |
Q |
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|||||||| ||| ||||| |||||| ||| ||||| ||||| || ||||||||||| ||||||| ||||| |||||||||||||| |||||||||| |
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| T |
10230484 |
cggaaagcgaaacattcacttgtgtcagagtctattttaggatgcgccgtcatactcatcaagagtttgccgttgaaatcataacggcccattgtttgga |
10230583 |
T |
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| Q |
101 |
tatcaccgtttggcgtaagattgatttcataaggaagatctgattctcctaaagcaaaaagtttgttaccaaacagagccaaacttgtgttggctaaacc |
200 |
Q |
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| ||||||||||| || || |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | || || |
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| T |
10230584 |
tgtcaccgtttggtgttagtttgacttcataaggaagatctgattctcctaaagcaaaaagacggttaccaaacagagctaaacttgtgttgaccaatcc |
10230683 |
T |
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| Q |
201 |
aatgccgttaga |
212 |
Q |
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|||||||||||| |
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| T |
10230684 |
aatgccgttaga |
10230695 |
T |
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