View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9878_low_6 (Length: 219)

Name: NF9878_low_6
Description: NF9878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9878_low_6
NF9878_low_6
[»] chr6 (2 HSPs)
chr6 (1-58)||(11171312-11171369)
chr6 (128-202)||(11171166-11171240)
[»] scaffold0734 (1 HSPs)
scaffold0734 (1-49)||(1908-1956)
[»] chr7 (3 HSPs)
chr7 (1-54)||(2407345-2407398)
chr7 (1-41)||(7875716-7875756)
chr7 (1-41)||(41415672-41415712)
[»] chr5 (1 HSPs)
chr5 (1-41)||(5003527-5003567)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11171369 - 11171312
Alignment:
Q  1 ttgttattgttttttacaagggaccaaaatcccaagattgtattacttacggggttaa 58  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11171369 ttgttattgttttttataagggaccaaaatcccaagattgtattacttacggggttaa 11171312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 11171240 - 11171166
Alignment:
Q  128 caaatccacatagaatgattaattcataaagcgatccaannnnnnnncatagtgtacacaactctcttttgtttt 202  Q
    |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  11171240 caaatccacatagaatgattaattcataaagcgatccaattgtttttcatagtgtacacaactctcttttgtttt 11171166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1956 - 1908
Alignment:
Q  1 ttgttattgttttttacaagggaccaaaatcccaagattgtattactta 49  Q
    |||||||||||||||| | |||||||||||| ||||||||| |||||||    
T  1956 ttgttattgttttttataggggaccaaaatctcaagattgtgttactta 1908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2407398 - 2407345
Alignment:
Q  1 ttgttattgttttttacaagggaccaaaatcccaagattgtattacttacgggg 54  Q
    |||||||||||||||| | |||||||||||| |||||||||  |||||| ||||    
T  2407398 ttgttattgttttttataggggaccaaaatcgcaagattgtgatacttaggggg 2407345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7875756 - 7875716
Alignment:
Q  1 ttgttattgttttttacaagggaccaaaatcccaagattgt 41  Q
    |||||||||||||||| | |||||||||||| |||||||||    
T  7875756 ttgttattgttttttataggggaccaaaatcgcaagattgt 7875716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41415712 - 41415672
Alignment:
Q  1 ttgttattgttttttacaagggaccaaaatcccaagattgt 41  Q
    |||||||||||||||| ||||| |||||||| |||||||||    
T  41415712 ttgttattgttttttataaggggccaaaatcgcaagattgt 41415672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 5003567 - 5003527
Alignment:
Q  1 ttgttattgttttttacaagggaccaaaatcccaagattgt 41  Q
    |||||||||||||||| |||||| ||||||| |||||||||    
T  5003567 ttgttattgttttttataagggatcaaaatcgcaagattgt 5003527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University