View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9879_high_1 (Length: 793)
Name: NF9879_high_1
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_1 |
 | |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 662; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 18 - 734
Target Start/End: Complemental strand, 48911944 - 48911227
Alignment:
| Q |
18 |
cttccaacaatttactcagctgcttcggtggtgctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtg |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911944 |
cttccaataatttactcagctgcttcggtggtgctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtg |
48911845 |
T |
|
| Q |
118 |
tgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaagga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911844 |
tgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaagga |
48911745 |
T |
|
| Q |
218 |
tacatgaaatcagcgacgatgcaatctggtgggtgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggt |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911744 |
tacatgaaatcagccacgatgcaatctggtgggtgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggt |
48911645 |
T |
|
| Q |
318 |
tgtcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911644 |
tgtcgaggtcggtggtggtgaagaggggttcgacgccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaa |
48911545 |
T |
|
| Q |
418 |
aggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagaggg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48911544 |
aggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagaggg |
48911445 |
T |
|
| Q |
518 |
atcatgtggccaggtgctaagtaaggtatgaagtatatattaagtggtttctcttctccttcttccgtattcatcatctttgccttgtcttctgtgtgtt |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911444 |
atcatgtggccaggtgctaagtaaggtatgaagtagatggtaagtgctttctcttctccttcttccgtattcatcatctttgccttgtcttctgtgtgtt |
48911345 |
T |
|
| Q |
618 |
tggatactatatatgaattagaatgaacgtgatgatgagagaggtattgtactaattaattgtttctgctattgcttttaatgtccaacaatggaga-ga |
716 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| || |
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|
| T |
48911344 |
tggatactatgaatgaattagaatgaacgtgatgatgagagaggtattgtagcaattaactgtttctgctattgcttttaatgtccaacaatggagagga |
48911245 |
T |
|
| Q |
717 |
tcctaactctggttgccc |
734 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
48911244 |
tcctaactctggttgccc |
48911227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 377 - 534
Target Start/End: Original strand, 48975036 - 48975193
Alignment:
| Q |
377 |
gaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacatttt |
476 |
Q |
| |
|
||||||||||||||||| |||| || ||||| | || |||| || |||||| || |||||| ||||| ||||| ||||| |||||||| |||| | |
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| T |
48975036 |
gaaggaaatggaacagtatgaaggcggaggtggttgtgagaagggatggatttgagaatgatttgggcattagagggagtggtaatgatggtaacatggt |
48975135 |
T |
|
| Q |
477 |
gacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccaggtgc |
534 |
Q |
| |
|
||| || | |||||||||| || || ||||||||||||||| |||||||||||||||| |
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|
| T |
48975136 |
gaccgcatgaggcaaagagtgtagcaatgtcgcatagaggggtcatgtggccaggtgc |
48975193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 423 - 552
Target Start/End: Original strand, 48952213 - 48952342
Alignment:
| Q |
423 |
tagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcat |
522 |
Q |
| |
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|||||||| |||||||| |||||| || | ||||||||||| || ||| |||| ||| | |||||||||| |||||||| |||| ||||||||| |
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| T |
48952213 |
tagatttgggaaggattttagcatttgaatgagtggttatgattgtaacaaagtgaccacgtgaagcaaagagagaagctatgtcacataaagggatcat |
48952312 |
T |
|
| Q |
523 |
gtggccaggtgctaagtaaggtatgaagta |
552 |
Q |
| |
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||| || | ||||||||| || |||||||| |
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| T |
48952313 |
gtgccctgctgctaagtatggaatgaagta |
48952342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 6110 - 5536
Alignment:
| Q |
18 |
cttccaacaatttactcagctgcttcggtggtgctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtg |
117 |
Q |
| |
|
||||||| || | ||||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
6110 |
cttccaataagtcactcatctgcttcggcggagctgcattcatggcaatagaatgaggaagaccaggaattacaaatgaagcagattcataaagagagtg |
6011 |
T |
|
| Q |
118 |
tgctttaacagattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaagga |
217 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
6010 |
tgctttaacagattctatggcacaaattgcaaacagagagaaaccgttgaaactgagtctaggaatttgaagcttgtttgcaagttcatcaacccaagga |
5911 |
T |
|
| Q |
218 |
tacatgaaatcagcgacgatgcaatctggtgggtgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggt |
317 |
Q |
| |
|
||| |||||| || || |||||||| ||||||||||||||||||||||||||||||| |||| |||| ||||||| ||| || |||| ||| || | |
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|
| T |
5910 |
aacaagaaatccgccacaatgcaatccggtgggtgctgctccacgaagtgttggatgggtggttggaggagagtggtggcttgaaagatcttgcgaagat |
5811 |
T |
|
| Q |
318 |
tgtcgaggtcggtggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaa |
417 |
Q |
| |
|
| ||||||||||||| || | ||||| |||||| ||||| |||||||| ||| | || |||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
5810 |
tctcgaggtcggtggcggcggagaggctttcgacgccatcagggaggccaacttcatgggaaggaaatggaacggtgtgaatacggaggtgttggtttaa |
5711 |
T |
|
| Q |
418 |
aggaatagatttgccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagaggg |
517 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||| |||| |
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|
| T |
5710 |
agggatggatttgccaaggatttgagcattggagggtgtggttatgatggtaactttttgacggcgtaaggcaaagagtgttgctatgtcacataaaggg |
5611 |
T |
|
| Q |
518 |
atcatgtggccaggtgctaagtaaggtatgaagtatatattaagtggtttctcttctccttcttccgtattcatc |
592 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
5610 |
atcatatgaccaggagctaagtaaggtatgaagtagatagtaagtgctttctcttctccttcttccatatccatc |
5536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 31 - 575
Target Start/End: Complemental strand, 10081 - 9553
Alignment:
| Q |
31 |
actcagctgcttcggtggtgctgcattcatggcaatagaatgaggaagatgaggaattacaaaagaagcagattcataaagagagtgtgctttaacagat |
130 |
Q |
| |
|
||||| |||||| || |||| |||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||| |
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|
| T |
10081 |
actcatctgcttaggcggtgttgcattcatgacaatagaatgaggaagaccaggaattacaaaagaagcatatccataaagtgagtgtgctttaacagat |
9982 |
T |
|
| Q |
131 |
tccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaatcag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||||| ||| ||||| | |
|
|
| T |
9981 |
tccatggcacaaatagcaaacagagagaaaccgttgaaagagagtcttggaatttgaagcttgtttgcaagttcatcaacccaaggaaacaaaaaatctg |
9882 |
T |
|
| Q |
231 |
cgacgatgcaatctggtgggtgctgctccacgaagtgttggatggttggtcggagtagagtggctgctcgatagattttggtgaggttgtcgaggtcggt |
330 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| || |||||||| | ||| | || ||| || |
|
|
| T |
9881 |
tcacgatgcaatccggtgggtgctgctccacgaagtgttggatgggtggtcggaggagagtggtagcttgaaagattttgaccatgttattgaagtcagt |
9782 |
T |
|
| Q |
331 |
ggtggtgaagaggggttcgacaccatcggggaggcctactgcttgtgaaggaaatggaacagtgtgaatacgaaggtgttggtttaaaggaatagatttg |
430 |
Q |
| |
|
|| || |||| ||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
9781 |
ggcggcagagagactttctacaccgtcggggaggcctacttcttgggaaggaaatggaacagtgtgaatacggagatgttggtttaaagggatagatttg |
9682 |
T |
|
| Q |
431 |
ccaaggatttgagcattggagggtgtggttatgatggtgacattttgacggcgtaaggcaaagagagttgctatgtcgcatagagggatcatgtggccag |
530 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| || |||| |
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|
| T |
9681 |
ccaaggatttgagcgttggaaggtgtggttatgatggtaacattttgacagcgta----------------tatgtcgcatagagggatcatatgaccag |
9598 |
T |
|
| Q |
531 |
gtgctaagtaaggtatgaagtatatattaagtggtttctcttctc |
575 |
Q |
| |
|
||| |||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
9597 |
gtgataagtaaggtatgaagtagattttaagtgctttctcttctc |
9553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 264
Target Start/End: Complemental strand, 948 - 812
Alignment:
| Q |
128 |
gattccatggcacaaatagcaaacagagagaaaccgttgaaagcaagtctaggaatttgtagcttgtttgcaagttcatgaacccaaggatacatgaaat |
227 |
Q |
| |
|
|||||||||||||| || | ||| || |||||||||||||| |||| ||| ||||| || ||||||||||| || |||| |||||||| | | |||| |
|
|
| T |
948 |
gattccatggcacatatggtaaatagtgagaaaccgttgaaggcaaatctcggaatgtgaagcttgtttgccagctcatccacccaagggaataaaaaat |
849 |
T |
|
| Q |
228 |
cagcgacgatgcaatctggtgggtgctgctccacgaa |
264 |
Q |
| |
|
| || ||||||||||| ||||| | ||| |||||||| |
|
|
| T |
848 |
ccgctacgatgcaatcaggtggttcctgttccacgaa |
812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 646 - 702
Target Start/End: Original strand, 31742730 - 31742786
Alignment:
| Q |
646 |
gtgatgatgagagaggtattgtactaattaattgtttctgctattgcttttaatgtc |
702 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| |||| ||||||||||||| |||| |
|
|
| T |
31742730 |
gtgatgatgagagagttattgtagcaattaattatttccgctattgcttttagtgtc |
31742786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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