View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_high_103 (Length: 204)

Name: NF9879_high_103
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_high_103
NF9879_high_103
[»] chr2 (2 HSPs)
chr2 (59-204)||(14923412-14923558)
chr2 (59-204)||(14914926-14915067)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 14923412 - 14923558
Alignment:
Q  59 attataatataatcaaaccctatatctaagatatattcccaagaacacttcttcattgtaatcactatttttcnnnnnnnnnn-----gtacaaatccac 153  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||    ||||||               ||||||||||||    
T  14923412 attataatataatgaaaccctatatctaagatatattcccaagaacacttcttcattgtcatc----tttttcaacaaaaaaaaaaaagtacaaatccac 14923507  T
Q  154 atgcatattcaatccatgtgatcccttgtattttgttgatttccaaccaat 204  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14923508 atgcatattcaatccatatgatcccttgtattttgttgatttccaaccaat 14923558  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 14914926 - 14915067
Alignment:
Q  59 attataatataatcaaaccctatatctaagatatattcccaagaacacttcttcattgtaatcactatttttcnnnnnnnnnngtacaaatccacatgca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||  | ||   |          |||||||||||||||||    
T  14914926 attataatataatcaaaccctatatctaagatatattcccaa---cacttcttcattgtcatcttt-ttcaacaaaaaaaaaagtacaaatccacatgca 14915021  T
Q  159 tattcaatccatgtgatcccttgtattttgttgatttccaaccaat 204  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  14915022 tattcaatccatgtgatcccttgtattttgttgattttcaaccaat 14915067  T

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