View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_12 (Length: 506)
Name: NF9879_high_12
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 26 - 490
Target Start/End: Original strand, 34353111 - 34353568
Alignment:
| Q |
26 |
caaaacaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgacagagacaatggaaga |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34353111 |
caaaacaaaacaaaaatagtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcgttgctagtttgggattcgacagagacaatggaaga |
34353210 |
T |
|
| Q |
126 |
cgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaaaccattgttgcttgt |
225 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
34353211 |
cgaaaagatcctggtggagctgaaagagtggctgatacggcaggcacgaaaagcacaagacaaagacttcactaaggaggaagaaaccattgtcgcttgt |
34353310 |
T |
|
| Q |
226 |
tgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgtttattttaatattac |
325 |
Q |
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| T |
34353311 |
tgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgtttattttaatattac |
34353410 |
T |
|
| Q |
326 |
accatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaatataatattttccatttgaatacctccatgattgaaata |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34353411 |
accatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaatataat-------atttgaatacctccatgattgaaata |
34353503 |
T |
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| Q |
426 |
ttttttataaccacttgtctgaccctgtctgcactcacctaaccgccaactccaattctgcaaac |
490 |
Q |
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| T |
34353504 |
ttttttataaccacttgtctgaccctgtcagcactcacctaaccgccaactccaattctgcaaac |
34353568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 27 - 467
Target Start/End: Original strand, 34358735 - 34359170
Alignment:
| Q |
27 |
aaaacaaaacaaaaatagtgt--gaaaccgacctgtgtaatatcatcggcaatattgagatcatcattgctagtttgggattcgacagagacaatggaag |
124 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||| |||||| |
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| T |
34358735 |
aaaacaaaacaaaaatagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtggaag |
34358834 |
T |
|
| Q |
125 |
acgaaaagatcctggtggagctgaaagagtggttgatacggcaggcacgaaaagcacaagacaaagacttgactaaggaggaagaaaccattgttgcttg |
224 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
34358835 |
acgaaaagatcctggtggagctgaaacagtggctgatacggccagcacgcaaagcacaagtcaaagacttgactaaggaggaagaagccattgttgtttg |
34358934 |
T |
|
| Q |
225 |
ttgagaattctcagatcacataacattattaaaagaagataaggtacacgcaagaaatacacaagatcgtggttgattgtgtttgtttattttaatatta |
324 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34358935 |
ttgagaattctcagatcacataacattgttaaaagaagataaggtacacgcacgaaatgcacaagatcatggttgattgtgtttgtttattttaatatta |
34359034 |
T |
|
| Q |
325 |
caccatgattgaaatatagtaaaagatagattaaaataataattagcactgaaacagtgaaatataatattttccatttgaatacctccatgattgaaat |
424 |
Q |
| |
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| ||||||||| | || ||||||||||||||||||||| |||| |||||| | ||||||||||||| |||||||| |||||||||||||||| |
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| T |
34359035 |
ctccatgattgcagtacagtaaaagatagattaaaatatctattaacactgagatagtgaaatataat-------atttgaatccctccatgattgaaat |
34359127 |
T |
|
| Q |
425 |
attttttataaccacttgtctgaccctgtctgcactcacctaa |
467 |
Q |
| |
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||||||||||||||||| |||| |||||||||| ||||||||| |
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|
| T |
34359128 |
attttttataaccacttttctggccctgtctgctctcacctaa |
34359170 |
T |
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