View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9879_high_21 (Length: 412)
Name: NF9879_high_21
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 50317 - 49989
Alignment:
| Q |
18 |
agaacatacacttaagtttaaatggactcatatttgagagattatcggtgtatgaaatataagttagaatcgcaccctaaatgaaaaggtagacattaaa |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50317 |
agaacatacacttaagtttgaatggactcatatttgagagattatcggtgtatgaaatataagttagaatcgcaccttaaatgaaaaggtagacattaaa |
50218 |
T |
|
| Q |
118 |
caaaatataaatcatatagctcatatatcaagtgaacgttaaaaaatatgtaactcaagataaaatatgaataaattcaatacctctctttcaattctga |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50217 |
caacatataaatcatatagctcatatatcaagtgaacgttaaaaaatatgtaactcaagataaaatatgaataaattcaatacctctctttcagttctga |
50118 |
T |
|
| Q |
218 |
cgagattctttgaagaaacaaaatgtaaattgatgtaagcttttgtacttgtattttaaaattaatgataaaaacatacatannnnnnnnnnngttgttg |
317 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50117 |
cgagattctttgaaaaaacaaaatgtaaattgatgtaagcttttgtacttgtattttaaaattaatgataaaaacatacat--ttttttttttgttgttg |
50020 |
T |
|
| Q |
318 |
atgaaattagttgtagttgcccttataacta |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
50019 |
atgaaattagttgtagttgcccttataacta |
49989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University