View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_23 (Length: 408)
Name: NF9879_high_23
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 12600971 - 12601349
Alignment:
| Q |
20 |
cagcaagggtcagtggatttttgttggtctgccaaacacggtcaaggtaagtgcttttattcttacgtcagttattgttttgtttcattgtgtgatcttg |
119 |
Q |
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| T |
12600971 |
cagcaagggtcagtggatttttgttggtctgccaaacacggtcaaggtaagtgcttttattcttacgtcagttattgttttgtttcattgtgtgatcttg |
12601070 |
T |
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| Q |
120 |
tcttataagctgaatttgtcattgctgtatttgtgaaggcatggcatattccgactgcatcgcagtttactcttgatgcacctaaggggcgagtccttgc |
219 |
Q |
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| T |
12601071 |
tcttataagctgaatttgtcattgctgtatttgtgaaggcatggcatattccgactgcatcgcagtttactcttgatgcacctagggggcgagtccttgc |
12601170 |
T |
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| Q |
220 |
aatgactgctggctatgatacactcttagccggagcagaggtaactatcagtttctgttatctatcagtttctgcgatattttctgttatctatcagttt |
319 |
Q |
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| T |
12601171 |
gatgactgctggctatgatacactcttagccggagcagaggtaactatcagtttctgttatctatcagtttctgcgatcttttctgttatctatcagttt |
12601270 |
T |
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| Q |
320 |
atgttaaatttgattaattaaatcacaggacggtgtaatctctgcatggagaggaaattttaaatccaattcccctatg |
398 |
Q |
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| T |
12601271 |
atgttaaatttgattaattaaatcacaggacggtgtaatctctgcatggagaggaaattttaaatccaattcccctatg |
12601349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 12599628 - 12599725
Alignment:
| Q |
146 |
gtatttgtgaaggcatggcatattccgactgcatcgcagtttactcttgatgcacctaaggggcgagtccttgcaatgactgctggctatgatacact |
243 |
Q |
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| T |
12599628 |
gtatttgtgaaggcatttcatattccgacttcttcacaatttactcttgatggaactaaggggcgagtccttgccatgactgttgccaatgatacact |
12599725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 11043886 - 11043815
Alignment:
| Q |
300 |
tttctgttatctatcagtttatgttaaatttgattaattaaatcacaggacggtgtaatctctgcatggagagg |
373 |
Q |
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| T |
11043886 |
tttctgttatctatcagttaatgtcaaattt--ttatttaaatcacaggatggtgtaatttctgcatggagagg |
11043815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 12599814 - 12599884
Alignment:
| Q |
300 |
tttctgttatctatcagtttatgttaaatttgattaattaaatcacaggacggtgtaatctctgcatggaga |
371 |
Q |
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| T |
12599814 |
tttctcttatctataaattaatgttaaatttgat-atttaaatcacaggatggtataatttctgcatggaga |
12599884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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