View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_28 (Length: 391)
Name: NF9879_high_28
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_28 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 11574093 - 11573703
Alignment:
| Q |
1 |
ctaataacatgaacaaacaagataagacaccgtttatatgcggaacttataaaccaccaaaacccaataaacgagccccaaatcttcagcgcagctgaat |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11574093 |
ctaacaacatgaacaaacaagataagacaccgtttatatgcggaacttataaaccaccaaaacccaataaacgagccccaaatcttcagcgcagctgagc |
11573994 |
T |
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| Q |
101 |
agttcggcaatataacagcctacatgcaaccatgacagcagccaacaacacagacgcaactgctacaacagaaaaccgatgcgccaacagtggccaaaca |
200 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| | |||||| |
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| T |
11573993 |
agttcggcaatatgacagcctacatgcgaccatgacagcagccaacaacacagacgcagctgcttcaacagaaaaccgatgcaccaacagcagtcaaaca |
11573894 |
T |
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| Q |
201 |
aattcgccagcagcagctaccctcctatgaaatcacggctagctaataaaacagttccttggattccaacacaattcataatataaacaagagggaatct |
300 |
Q |
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|||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11573893 |
aattcgacagcagcagctcccctcctatgaaatcacgtctagctaataaaacagttccttggattccaacacaattcataatataaacaagagggaatct |
11573794 |
T |
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| Q |
301 |
tcaatcttatgcttcttcaaccccatttctaggataaatcacgggtacctaaattcaaatttacactaaggttcaataatagtccatgtga |
391 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11573793 |
tcaatcttatgcttcttcaaccccatttctaggacaaatcacgggtacctaaattcaaatttacactaaggttcaataatagaccatgtga |
11573703 |
T |
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