View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_34 (Length: 355)
Name: NF9879_high_34
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 3644986 - 3645317
Alignment:
| Q |
8 |
tagcagagaaactgaaagacagaaacaaacacaagtcattttagttattcaagcaaatgtggatgctaactaaaattaacatgtatagaatgtgcaaagg |
107 |
Q |
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| T |
3644986 |
tagcaaagaaactgaaagacagaaacaaacacaagtcattttagttattcaagcaaatgtggatgctaactaaaattaatatgtatagaaagtgcaaagg |
3645085 |
T |
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| Q |
108 |
ggtaagacacttattatgttgatgatctatagctagctttcataaaaaggagatagaaaagtaccactttttgtatatgtatagatatttttcatgtgag |
207 |
Q |
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| T |
3645086 |
ggtaagacacttattatgttgctgatctatagctagctttcataaaaaggagatagaaaagtaccactttttgtgtatgtatagatatttttcatgtgag |
3645185 |
T |
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| Q |
208 |
atgcttgaatcaaaagtagacaagttaggcatttgagcatggaaggaaacaaagttttaggtatatgttaacacagattcaggtatatgtctattccaat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3645186 |
atgcttgaatcaaaagtagacaagttaggcatttgagcatggaaggaaacaaagttttaggtatatgttaacacagattcaggtatatgtctattccaat |
3645285 |
T |
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| Q |
308 |
gttgcattttttaagtatatagctcaaaaagt |
339 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3645286 |
gttgcattttttaagtatatagctcaaaaagt |
3645317 |
T |
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