View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_41 (Length: 331)
Name: NF9879_high_41
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 52246192 - 52245884
Alignment:
| Q |
20 |
aatcagacattgcagaaaacccaacaaggctgtcaccgtcttcaaacgct---acttctactagctgttgttcttctttcagcagtctcatgtcaagctt |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52246192 |
aatcagacattgcagaaaaccaaacaaggctgtcaccgtcttcaaacgcttctacttctactagcttttgttcttctttcagcagtctcatgtcaagctt |
52246093 |
T |
|
| Q |
117 |
gcctcactcagatatccccacatctttctctatcacagaacccacaaccctctcacttttcacaccactctatctctccaataacagcaacaatgatcac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52246092 |
gcctcactcagatatccccacatctttctctatcacagaacccacaaccctctcacttttcacaccactctatctctccaataacaacaacaatgatcac |
52245993 |
T |
|
| Q |
217 |
ccttttccccattacaatactgcatctccacaacctgtattatctgctacagcattactccaaaaagctgctcaagtgggttcatcttcatccaatgcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52245992 |
ccttttccccattacaatactgcatctccacaacctgtattatctgctactgcattactccaaaaagctgctcaagtgggttcatcttcatccaatgcat |
52245893 |
T |
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| Q |
317 |
ctctgcttc |
325 |
Q |
| |
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|| |||||| |
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| T |
52245892 |
ctttgcttc |
52245884 |
T |
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