View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9879_high_42 (Length: 328)
Name: NF9879_high_42
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 3331909 - 3331650
Alignment:
| Q |
7 |
aaaaagcagataggattagagagtcctacctggcaacatctttatctcttcttgacttgctttatgtgatatgatgtctctcatttaggtagtttctaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331909 |
aaaaagcagataggattagagagtcctacctggcaacatctttatctcttcttgacttgctttatgtgatatgatgtctctcatttaggtagtttctaga |
3331810 |
T |
|
| Q |
107 |
gaagtcatattcatgcatggaacatggaattaacaagaatgagtggaacctcctccaattgggataactatatgtgtggttggttacacatgaataaaat |
206 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3331809 |
gaagtcatattcatgcctggaacatggaattaacaagaatgagtggaac---ctccaattgggataattatatgtgtggttggttacacatgaataaaat |
3331713 |
T |
|
| Q |
207 |
tatggttggattaagattatccgttacaattgttgatgttcgttgaaaatttacatgccgaaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3331712 |
tatggttggattaagattatccgttacaattgttgatgttcgttgaaaatttacatgccgaaa |
3331650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 21556661 - 21556718
Alignment:
| Q |
243 |
tgttcgttgaaaatttacatgccgaaatggtctcacattgcttagaattgtaaaggaa |
300 |
Q |
| |
|
|||| ||||| ||| |||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
21556661 |
tgttggttgataatgtacatgttgaaaaagtctcacattgcttagaattgtaaaggaa |
21556718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 300
Target Start/End: Complemental strand, 17645806 - 17645778
Alignment:
| Q |
272 |
gtctcacattgcttagaattgtaaaggaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17645806 |
gtctcacattgcttagaattgtaaaggaa |
17645778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University