View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_high_46 (Length: 319)
Name: NF9879_high_46
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 38013361 - 38013656
Alignment:
| Q |
18 |
aaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccat |
117 |
Q |
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| T |
38013361 |
aaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccat |
38013460 |
T |
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| Q |
118 |
cgctaacctccctttccttaccttactctctctctcccacatccccaaccttgtcggcactattctcccaccgtccatcttcaaactcaaaaaacttgag |
217 |
Q |
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| T |
38013461 |
cgctaacctccctttccttaccttactctctctctcccacatccccaaccttgtcggcactatcctcccaccgtccatcttcaaactc--aaaacttaag |
38013558 |
T |
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| Q |
218 |
tacctcgccctcagatacaccaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaccaaact |
315 |
Q |
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| T |
38013559 |
tacctcaccctcagatacaccaacatctccggcgagataccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaacaaact |
38013656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 62 - 316
Target Start/End: Complemental strand, 37697685 - 37697429
Alignment:
| Q |
62 |
aaccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccctttccttaccttactctctctctcccacatcc |
161 |
Q |
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| T |
37697685 |
aaccttggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctcccttttcttgacgatttctctctctcccgcatcc |
37697586 |
T |
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| Q |
162 |
ccaaccttgtcggcactattctcccaccgtccatcttcaaactcaaaaaacttgagtacctcgccctcag--atac---accaacatctccggcgagata |
256 |
Q |
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| T |
37697585 |
ccaacctcgtcggcacta---tcccaccgtccatctccaaactcaccaatcttgattacctcaccctcagccataccataccagcatctccggcgagata |
37697489 |
T |
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| Q |
257 |
ccaaacaccctctcacagatcaaaacgctcttacgcatcgacttctacaacaccaaactc |
316 |
Q |
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|||||||| || ||| | || ||||| || ||||| ||||||||| ||||| ||||||| |
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| T |
37697488 |
ccaaacactctttcaaatatgaaaaccctattacggatcgacttcaccaacaacaaactc |
37697429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 37994043 - 37994089
Alignment:
| Q |
236 |
accaacatctccggcgagataccaaacaccctctcacagatcaaaac |
282 |
Q |
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| T |
37994043 |
accaacatctccggcgagatacctaacactctctcagagatcaaaac |
37994089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 37993874 - 37993945
Alignment:
| Q |
64 |
ccttgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccctttcct |
135 |
Q |
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| T |
37993874 |
ccttgatctccaggacctcgaccttcctcaccctgttccaattccaccctccatattcaacctccctttcct |
37993945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 37989859 - 37989905
Alignment:
| Q |
236 |
accaacatctccggcgagataccaaacaccctctcacagatcaaaac |
282 |
Q |
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| T |
37989859 |
accaacatctccggggagataccttacactctctcacagatcaaaac |
37989905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 282
Target Start/End: Original strand, 25326330 - 25326514
Alignment:
| Q |
98 |
gttccaattccaccctccat---cgctaacctccctttccttaccttactctctctctcccacatccccaaccttgtcggcactattctcccaccgtcca |
194 |
Q |
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|||| ||||||||||||||| | |||||||||||||| | | ||| |||||| || | ||||||||||||| || |||||||| ||| || |||| |
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| T |
25326330 |
gttcaaattccaccctccatattcactaacctccctttcataaactttctctctatcgacaacatccccaacctcgttggcactat---cccgccttcca |
25326426 |
T |
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| Q |
195 |
tcttcaaactcaaaaaacttgagtacctcgccctcagatacaccaacatctccggcgagataccaaacaccctctcacagatcaaaac |
282 |
Q |
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||| |||||||| ||||||||| |||| | |||| ||| | |||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
25326427 |
tctccaaactcaccaaacttgaggtcctcatcatcagcggcacaagcatctccggcgagataccaaactcactctcacagattaaaac |
25326514 |
T |
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