View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_high_48 (Length: 313)

Name: NF9879_high_48
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_high_48
NF9879_high_48
[»] chr5 (15 HSPs)
chr5 (18-175)||(43044951-43045108)
chr5 (226-302)||(43045165-43045241)
chr5 (192-304)||(43152320-43152432)
chr5 (217-292)||(2868335-2868410)
chr5 (187-292)||(19784868-19784974)
chr5 (232-296)||(5465398-5465462)
chr5 (191-270)||(19203960-19204039)
chr5 (191-301)||(3748944-3749054)
chr5 (245-302)||(2483724-2483781)
chr5 (244-301)||(22811072-22811129)
chr5 (232-296)||(6988213-6988277)
chr5 (231-298)||(22482238-22482306)
chr5 (207-302)||(33467963-33468059)
chr5 (191-298)||(33953857-33953964)
chr5 (246-298)||(40495369-40495421)
[»] chr3 (14 HSPs)
chr3 (191-303)||(43087503-43087615)
chr3 (191-302)||(32932072-32932183)
chr3 (192-301)||(25181242-25181351)
chr3 (237-298)||(52931577-52931638)
chr3 (191-299)||(44225599-44225707)
chr3 (191-297)||(10853225-10853332)
chr3 (195-297)||(42644298-42644401)
chr3 (191-254)||(50671797-50671859)
chr3 (192-302)||(53567963-53568073)
chr3 (244-301)||(7012672-7012729)
chr3 (231-292)||(16246094-16246154)
chr3 (244-297)||(19877453-19877506)
chr3 (231-298)||(31084242-31084310)
chr3 (246-298)||(53179883-53179935)
[»] chr2 (12 HSPs)
chr2 (191-302)||(26806212-26806323)
chr2 (195-302)||(30599864-30599972)
chr2 (191-302)||(42770353-42770464)
chr2 (231-298)||(3853944-3854012)
chr2 (232-301)||(23359927-23359997)
chr2 (232-301)||(1763261-1763330)
chr2 (191-270)||(3602416-3602496)
chr2 (192-272)||(5055239-5055319)
chr2 (186-298)||(12110918-12111030)
chr2 (191-298)||(25747838-25747945)
chr2 (231-298)||(34433302-34433370)
chr2 (244-292)||(38600453-38600501)
[»] chr4 (10 HSPs)
chr4 (186-300)||(5025547-5025661)
chr4 (197-301)||(39000512-39000616)
chr4 (191-241)||(49573041-49573091)
chr4 (191-302)||(14597583-14597694)
chr4 (191-301)||(54488622-54488733)
chr4 (244-298)||(55638767-55638821)
chr4 (193-297)||(20232003-20232108)
chr4 (191-301)||(38306028-38306139)
chr4 (231-297)||(42944896-42944963)
chr4 (244-298)||(26651860-26651914)
[»] chr1 (13 HSPs)
chr1 (192-301)||(4347030-4347139)
chr1 (191-297)||(40352451-40352557)
chr1 (192-292)||(13344838-13344938)
chr1 (231-296)||(47085894-47085960)
chr1 (191-304)||(29438636-29438749)
chr1 (230-297)||(18325315-18325382)
chr1 (192-291)||(36447637-36447736)
chr1 (231-296)||(6953695-6953760)
chr1 (186-298)||(31223433-31223546)
chr1 (244-292)||(13056062-13056110)
chr1 (231-298)||(20800276-20800344)
chr1 (231-298)||(35569201-35569269)
chr1 (246-302)||(43730059-43730115)
[»] chr8 (12 HSPs)
chr8 (217-292)||(38715194-38715269)
chr8 (192-302)||(29970841-29970951)
chr8 (191-301)||(31246273-31246384)
chr8 (191-292)||(35550270-35550371)
chr8 (192-297)||(41891779-41891884)
chr8 (232-302)||(26490972-26491043)
chr8 (230-292)||(38516347-38516409)
chr8 (232-301)||(33588760-33588829)
chr8 (191-256)||(41408275-41408340)
chr8 (244-298)||(41289070-41289124)
chr8 (232-297)||(36779435-36779500)
chr8 (232-292)||(20190188-20190248)
[»] scaffold0184 (1 HSPs)
scaffold0184 (191-281)||(7332-7422)
[»] chr7 (4 HSPs)
chr7 (193-292)||(16353489-16353589)
chr7 (194-302)||(4228599-4228707)
chr7 (191-301)||(42752136-42752247)
chr7 (232-292)||(44274700-44274760)
[»] scaffold0005 (1 HSPs)
scaffold0005 (191-302)||(219684-219795)
[»] chr6 (5 HSPs)
chr6 (185-292)||(3605704-3605811)
chr6 (230-292)||(1499997-1500059)
chr6 (231-297)||(5584047-5584113)
chr6 (206-302)||(16121974-16122071)
chr6 (231-298)||(16442348-16442416)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 43044951 - 43045108
Alignment:
Q  18 ccaagtttctagaggtttttagaatctattgagcttaacgttcaagtttataacggtcactttttgtgtcccccaccacaatacttgtccttaaaatttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  43044951 ccaagtttctagaggtttttagaatctattgagcttaacgttcaagtttataacggtcactttttgtgtcccccaccacaatacttgtccttaaaatgtt 43045050  T
Q  118 cctctgcctttaacgtgacttttgttttatttgctcagaaatttattcattacacttg 175  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43045051 cctctgcctttaacgtgacttttgttttatttggtcagaaatttattcattacacttg 43045108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 43045165 - 43045241
Alignment:
Q  226 tagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagataccttt 302  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  43045165 tagttgaattgattttgcataattgattttacataaaagtgagtttagtgtaaattaatttatgtttagataccttt 43045241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 43152320 - 43152432
Alignment:
Q  192 gtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtt 291  Q
    ||||||||||||||||||||   |||||||||| |  ||||||||||||| || | ||||||| |  |||||||||||| | || ||| |||||||||||    
T  43152320 gtgtgtttggttatgcggtgcaaataattgattttgtttgaattgattttacatagttgatttcaattaaaagtgagttgaatgaaaagtgatttatgtt 43152419  T
Q  292 tagatacctttgc 304  Q
    | |||||||||||    
T  43152420 tggatacctttgc 43152432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 2868335 - 2868410
Alignment:
Q  217 aattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgttt 292  Q
    |||||||| |||| ||||| |||||| |||||||||||||  |||||||||||| | |||||| ||||||| ||||    
T  2868335 aattgattttagtagaattaattttgtagaattgattttagttaaaagtgagttgaatgtaaagtgatttaagttt 2868410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 292
Target Start/End: Complemental strand, 19784974 - 19784868
Alignment:
Q  187 taattgtgtgtttggttatgcggtggttataattgattctagttgaattgatttt-gcagaattgattttatataaaagtgagtttagtgtaaattgatt 285  Q
    ||||||| |||||||||||||||||  ||||||||||| |  |||||||||||||    |||||||||||   |||||||||||| | |||||| || ||    
T  19784974 taattgtatgtttggttatgcggtgaatataattgattttgattgaattgattttatttgaattgattttggttaaaagtgagttgaatgtaaagtggtt 19784875  T
Q  286 tatgttt 292  Q
    |||||||    
T  19784874 tatgttt 19784868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 5465398 - 5465462
Alignment:
Q  232 aattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagat 296  Q
    ||||||||||| | ||||||||||| |||||||||| || | || ||| ||||||||||||||||    
T  5465398 aattgattttgtaaaattgattttagataaaagtgaattgaatgaaaaatgatttatgtttagat 5465462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 19203960 - 19204039
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtt 270  Q
    |||||||||||||||||||||   | |||||||| | || ||||||||||| || |||||||| |  |||||||||||||    
T  19203960 tgtgtgtttggttatgcggtgacgagaattgattttggtagaattgattttacataattgattatgaataaaagtgagtt 19204039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 3749054 - 3748944
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    |||||||||| || ||| ||||  | |||||||| |  ||||| ||||||| || |||||||| ||  |||||||||||||| |||||| || |||||||    
T  3749054 tgtgtgtttgattttgctgtggagaaaattgattttgtttgaactgattttacaaaattgattatagttaaaagtgagtttaatgtaaagtggtttatgt 3748955  T
Q  291 ttagatacctt 301  Q
    || | ||||||    
T  3748954 ttggttacctt 3748944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 2483724 - 2483781
Alignment:
Q  245 gaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagataccttt 302  Q
    ||||||||||||  |||||||||||| | ||| ||||||||||||||| |||| ||||    
T  2483724 gaattgattttagttaaaagtgagttgaatgtgaattgatttatgtttggataacttt 2483781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 22811129 - 22811072
Alignment:
Q  244 agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatacctt 301  Q
    ||||||||||||   |||||||||||| | |||||| |||||||||||| ||||||||    
T  22811129 agaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttggatacctt 22811072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 6988277 - 6988213
Alignment:
Q  232 aattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagat 296  Q
    ||||||||||| | |||||||||||  ||||||| |||| | | |||| ||||||||||||||||    
T  6988277 aattgattttgtaaaattgattttaattaaaagtaagttgaatttaaaatgatttatgtttagat 6988213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 22482306 - 22482238
Alignment:
Q  231 gaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||||||||  ||||||||||||   |||||||||||| | ||| ||||||||||||||| |||||    
T  22482306 gaattgattttgagagaattgattttggttaaaagtgagttgaatgtgaattgatttatgtttggatac 22482238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 33467963 - 33468059
Alignment:
Q  207 cggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagataccttt 302  Q
    ||||||||| |||||||| ||    |||||||||||  |||| |||||||   |||||||||||| |||||| |||||||| ||||| |||||||||    
T  33467963 cggtggttagaattgattttaacaaaattgattttgatagaactgattttggttaaaagtgagttgagtgtatattgatttgtgtttggataccttt 33468059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 33953857 - 33953964
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatg 289  Q
    ||||||||||||   || ||||| | |||||||| | || ||||||| ||||  |||||||||||||| |||||||||||| |  ||||||||| |||||    
T  33953857 tgtgtgtttggtatggcagtggtgaaaattgattttggtagaattgagtttgagagaattgattttatttaaaagtgagttgaacgtaaattga-ttatg 33953955  T
Q  290 tttagatac 298  Q
    ||| |||||    
T  33953956 tttggatac 33953964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 40495369 - 40495421
Alignment:
Q  246 aattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||||||   |||||||||||||  ||||||||||||||||||| |||||    
T  40495369 aattgattttggttaaaagtgagtttgatgtaaattgatttatgtttggatac 40495421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 191 - 303
Target Start/End: Original strand, 43087503 - 43087615
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||| ||||||    
T  43087503 tgtgtgtttggttatgcggtggttataattgattctatttgaattgattttgcaaaattgatgttacataaaagcgagtttagtgtaaattgagttatgt 43087602  T
Q  291 ttagatacctttg 303  Q
    || ||||| ||||    
T  43087603 ttggatacttttg 43087615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 191 - 302
Target Start/End: Original strand, 32932072 - 32932183
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||||  |||| |||||||||||||||||||    
T  32932072 tgtgtgtttggttatgctgtagttataattgattctaattgaattgattttgcagaattgattttacataaaagcaagttcagtgtaaattgatttatgt 32932171  T
Q  291 ttagataccttt 302  Q
    ||  ||||||||    
T  32932172 ttgaataccttt 32932183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 25181351 - 25181242
Alignment:
Q  192 gtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtt 291  Q
    ||||||||||||||||||||| || |||||||  |  |||||||||||||| ||||||||||||   |||||||||||||| |||||| | |||||||||    
T  25181351 gtgtgtttggttatgcggtggctagaattgatattgattgaattgattttgtagaattgattttgattaaaagtgagtttaatgtaaaattatttatgtt 25181252  T
Q  292 tagatacctt 301  Q
    | ||||||||    
T  25181251 tggatacctt 25181242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 52931577 - 52931638
Alignment:
Q  237 attttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    |||||||| |||||||||||  |||||||||||||||||||||||||||||||||| |||||    
T  52931577 attttgcaaaattgattttagttaaaagtgagtttagtgtaaattgatttatgtttggatac 52931638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 299
Target Start/End: Complemental strand, 44225707 - 44225599
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    ||||||||||||| || |||||  | |||||||| || |  ||||||||||| ||||||||||||   |||||||||||||| |||||| ||||||||||    
T  44225707 tgtgtgtttggttgtgtggtggagaaaattgattttaatataattgattttgtagaattgattttcgttaaaagtgagtttaatgtaaagtgatttatgt 44225608  T
Q  291 ttagatacc 299  Q
    || ||||||    
T  44225607 ttggatacc 44225599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 297
Target Start/End: Original strand, 10853225 - 10853332
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatg 289  Q
    ||||||||||||   |||||||| | |||||||| |  | ||||||| ||||  ||||||||||||   |||||||||||||| | ||||||||||||||    
T  10853225 tgtgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttgagagaattgattttggttaaaagtgagtttaatataaattgatttatg 10853324  T
Q  290 tttagata 297  Q
    ||| ||||    
T  10853325 tttggata 10853332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 297
Target Start/End: Complemental strand, 42644401 - 42644298
Alignment:
Q  195 tgtttggttatgcggtggttataattgattctagttgaattgattttgcagaa-ttgattttatataaaagtgagtttagtgtaaattgatttatgttta 293  Q
    ||||||||||||||||| | | |||||||| |   ||||||||||||  | || |||||||||  |||||||||||| | |||||| ||||||||||||     
T  42644401 tgtttggttatgcggtgatgagaattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttg 42644302  T
Q  294 gata 297  Q
    ||||    
T  42644301 gata 42644298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 50671797 - 50671859
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattt 254  Q
    ||||||||||||| ||||||||  |||||||||| || ||||||||||||| || |||||||||    
T  50671797 tgtgtgtttggtt-tgcggtggaaataattgattttatttgaattgattttacataattgattt 50671859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 302
Target Start/End: Complemental strand, 53568073 - 53567963
Alignment:
Q  192 gtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtt 291  Q
    ||||||||| ||||||| || | | |||||||| |   |||||||||||| || ||||||||||   |||||||||||| | || ||| | |||||||||    
T  53568073 gtgtgtttgattatgcgatgatgaaaattgattttgagtgaattgattttacaaaattgattttgattaaaagtgagttgaatgaaaagtaatttatgtt 53567974  T
Q  292 tagataccttt 302  Q
    | |||||||||    
T  53567973 tggataccttt 53567963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 7012729 - 7012672
Alignment:
Q  244 agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatacctt 301  Q
    ||||||||||||   |||||||||||| | |||||| |||||||||||| ||||||||    
T  7012729 agaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttggatacctt 7012672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 16246094 - 16246154
Alignment:
Q  231 gaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgttt 292  Q
    ||||||| |||| |||||||||||||  ||||||||||||   |||||||||||||||||||    
T  16246094 gaattgagtttg-agaattgattttagttaaaagtgagttagatgtaaattgatttatgttt 16246154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 19877506 - 19877453
Alignment:
Q  244 agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagata 297  Q
    ||||||||||||   ||||||||||||   ||||||||||||||||||||||||    
T  19877506 agaattgattttggttaaaagtgagttggatgtaaattgatttatgtttagata 19877453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 31084310 - 31084242
Alignment:
Q  231 gaattgattttgca-gaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    |||||||||||| | |||||||||||   |||||||||||| | ||| ||||||||||||||| |||||    
T  31084310 gaattgattttgaaagaattgattttgattaaaagtgagttgaatgtgaattgatttatgtttggatac 31084242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 53179935 - 53179883
Alignment:
Q  246 aattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||||||   |||||||||||||  ||||||||||||||||||| |||||    
T  53179935 aattgattttggttaaaagtgagtttgatgtaaattgatttatgtttggatac 53179883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 191 - 302
Target Start/End: Original strand, 26806212 - 26806323
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    |||||||||||||| ||||||   |||||||||| | |||||||| ||||| |||||||||||||   |||||||||||| |||| ||| ||||||||||    
T  26806212 tgtgtgtttggttacgcggtgacaataattgattttggttgaattaattttacagaattgattttgattaaaagtgagttgagtgaaaagtgatttatgt 26806311  T
Q  291 ttagataccttt 302  Q
    || |||||||||    
T  26806312 ttggataccttt 26806323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 302
Target Start/End: Original strand, 30599864 - 30599972
Alignment:
Q  195 tgtttggttatgcggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgttta 293  Q
    |||||||||  |||||||||| |||||||||||    |||| ||||||  ||||||||||||   |||||||||||| ||||| ||||||||| |||||     
T  30599864 tgtttggtttggcggtggttagaattgattctaacaaaattaattttgatagaattgattttggttaaaagtgagttgagtgtcaattgatttgtgtttg 30599963  T
Q  294 gataccttt 302  Q
    |||||||||    
T  30599964 gataccttt 30599972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 302
Target Start/End: Original strand, 42770353 - 42770464
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    |||||||||||||| ||||||   ||||||||||   |||||||||||||| || |||| |||||   |||||||||||| | || |||||||| |||||    
T  42770353 tgtgtgtttggttaggcggtgacaataattgatttcggttgaattgattttacataattcattttgattaaaagtgagttgaatgaaaattgatctatgt 42770452  T
Q  291 ttagataccttt 302  Q
    || |||| ||||    
T  42770453 ttggatatcttt 42770464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 3854012 - 3853944
Alignment:
Q  231 gaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||||||||  ||||||||||||   |||||||||||| | ||||||||||||||||||| |||||    
T  3854012 gaattgattttgatagaattgattttgattaaaagtgagttgaatgtaaattgatttatgtttggatac 3853944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 23359927 - 23359997
Alignment:
Q  232 aattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatacctt 301  Q
    |||||||||||  ||||||||||||   |||||||||||| | |||||| |||||||||||| ||||||||    
T  23359927 aattgattttggtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttggatacctt 23359997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 1763330 - 1763261
Alignment:
Q  232 aattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatacctt 301  Q
    ||||||||||| | ||||||||||   ||||| |||||| | | |||| |||||||||||||||||||||    
T  1763330 aattgattttgtaaaattgattttggttaaaattgagttgaatttaaagtgatttatgtttagatacctt 1763261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 3602416 - 3602496
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttg-cagaattgattttatataaaagtgagtt 270  Q
    ||||||||||||| ||||||| | | |||||||| |   |||||||||||||  |||||||||||| | ||||||||||||    
T  3602416 tgtgtgtttggttctgcggtgatgaaaattgatttttactgaattgattttgatagaattgattttgtctaaaagtgagtt 3602496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 5055319 - 5055239
Alignment:
Q  192 gtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagttta 272  Q
    ||||||||| ||| |||||||  | | |||||| |  ||||||| |||||||||||||||||||   ||||||||||||||    
T  5055319 gtgtgtttgattacgcggtggcaaaatttgattttgattgaattaattttgcagaattgattttggttaaaagtgagttta 5055239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 12111030 - 12110918
Alignment:
Q  186 ttaattgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatt 285  Q
    |||| ||||||||||||| |||||||   | |||||||| |  | ||||||||||||   ||||||||||   |||||||||||| | | |||| |||||    
T  12111030 ttaagtgtgtgtttggttgtgcggtgacgaaaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatt 12110931  T
Q  286 tatgtttagatac 298  Q
    ||||||| |||||    
T  12110930 tatgtttggatac 12110918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 25747838 - 25747945
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttg-cagaattgattttatataaaagtgagtttagtgtaaattgatttatg 289  Q
    |||||||||||||  |||||||| |||||||| | |  | ||||||| ||||  ||||||||||||   |||||||||||| | ||| ||||||||||||    
T  25747838 tgtgtgtttggttccgcggtggtgataattgagtttgatagaattgagtttgagagaattgattttgattaaaagtgagttgaatgt-aattgatttatg 25747936  T
Q  290 tttagatac 298  Q
    ||| |||||    
T  25747937 tttggatac 25747945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 34433302 - 34433370
Alignment:
Q  231 gaattgattttg-cagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||| |||| |||||||||||||   |||||||||||| | ||| ||||||||||||||| |||||    
T  34433302 gaattgagtttgacagaattgattttgattaaaagtgagttgaatgtgaattgatttatgtttggatac 34433370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 38600453 - 38600501
Alignment:
Q  244 agaattgattttatataaaagtgagtttagtgtaaattgatttatgttt 292  Q
    ||||||||||||   |||||||||||||  |||||||||||||||||||    
T  38600453 agaattgattttggttaaaagtgagtttgatgtaaattgatttatgttt 38600501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 5025661 - 5025547
Alignment:
Q  186 ttaattgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatt 285  Q
    |||| |||||||||||||||||||||  || |||||||| |  |||||||||||||| |||||||||||||  || ||||||||| ||   |||||||||    
T  5025661 ttaagtgtgtgtttggttatgcggtgactaaaattgattttgattgaattgattttgtagaattgattttagttagaagtgagttgagcaaaaattgatt 5025562  T
Q  286 tatgtttagatacct 300  Q
    ||||||| |||||||    
T  5025561 tatgtttggatacct 5025547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 301
Target Start/End: Original strand, 39000512 - 39000616
Alignment:
Q  197 tttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagat 296  Q
    |||||||| |||||| ||| |||||||| |  |||||||||||||| |||||||| ||||  |||||||||| ||| |  ||| |||||||||||| |||    
T  39000512 tttggttacgcggtgattaaaattgattttgattgaattgattttgtagaattgagtttagttaaaagtgagcttaataaaaaatgatttatgtttggat 39000611  T
Q  297 acctt 301  Q
    |||||    
T  39000612 acctt 39000616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 49573091 - 49573041
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgatttt 241  Q
    ||||| |||| ||||||||||||||||||||||| ||||||||||||||||    
T  49573091 tgtgtatttgattatgcggtggttataattgattttagttgaattgatttt 49573041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 302
Target Start/End: Original strand, 14597583 - 14597694
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    |||||||||||||| ||||||   |||||||||| | |||||||||||||| || || | |||||   |||||||||||| | || ||| ||||||||||    
T  14597583 tgtgtgtttggttacgcggtgaaaataattgattttggttgaattgattttacataactaattttgattaaaagtgagttgaatgaaaagtgatttatgt 14597682  T
Q  291 ttagataccttt 302  Q
    || |||| ||||    
T  14597683 ttggatatcttt 14597694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 54488733 - 54488622
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatg 289  Q
    ||||||||||||| ||||||||  |||||||||| |    ||||||||||||  ||||||||||||   |||||||||||| | ||| ||||||||||||    
T  54488733 tgtgtgtttggttctgcggtggagataattgattttgacagaattgattttgttagaattgatttttgttaaaagtgagttgaatgtgaattgatttatg 54488634  T
Q  290 tttagatacctt 301  Q
    |||  |||||||    
T  54488633 tttgaatacctt 54488622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 55638767 - 55638821
Alignment:
Q  244 agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||||||||   |||||||||||| | |||||||||||||||||||||||||    
T  55638767 agaattgatttttgttaaaagtgagttaaatgtaaattgatttatgtttagatac 55638821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 20232108 - 20232003
Alignment:
Q  193 tgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagttt-agtgtaaattgatttatgtt 291  Q
    ||||||||||||||||||||| | |||||||| | || |||||||||||  | ||||||||||   ||||||| ||||| | || ||| || ||||||||    
T  20232108 tgtgtttggttatgcggtggtgagaattgattttggtggaattgattttataaaattgattttggttaaaagttagtttgaatgaaaagtgttttatgtt 20232009  T
Q  292 tagata 297  Q
    ||||||    
T  20232008 tagata 20232003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 38306139 - 38306028
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatg 289  Q
    ||||||||||||| | ||||||  |||||||||| |    ||||||||||||  ||||||||||||   |||||||||||| | ||  ||||||||||||    
T  38306139 tgtgtgtttggttctacggtggagataattgattttgacagaattgattttgttagaattgatttttgttaaaagtgagttgaatgcgaattgatttatg 38306040  T
Q  290 tttagatacctt 301  Q
    ||| ||||||||    
T  38306039 tttggatacctt 38306028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 42944896 - 42944963
Alignment:
Q  231 gaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagata 297  Q
    ||||||||||||  ||||||||||||   |||||||||||| | ||| ||||||||||||||||||||    
T  42944896 gaattgattttgagagaattgattttggttaaaagtgagttgaatgtgaattgatttatgtttagata 42944963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 26651860 - 26651914
Alignment:
Q  244 agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||||||||   |||||||||||| | ||| |||||||||||||||||||||    
T  26651860 agaattgattttggttaaaagtgagttgaatgtgaattgatttatgtttagatac 26651914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 4347139 - 4347030
Alignment:
Q  192 gtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtt 291  Q
    |||||||||||| ||||||||  | |||||||| | || |||||||||||| ||||||||||||   |||||||||||| | |||||| |||||||||||    
T  4347139 gtgtgtttggttgtgcggtggaaaaaattgattttggtagaattgattttgtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtt 4347040  T
Q  292 tagatacctt 301  Q
    | ||||||||    
T  4347039 tggatacctt 4347030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 297
Target Start/End: Complemental strand, 40352557 - 40352451
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    ||||||||||||| |||||||   | |||||||| |  | ||||||||||||  |||||||||||   |||||||||||||| |||||| ||||||||||    
T  40352557 tgtgtgtttggttgtgcggtgaggagaattgattttgatagaattgattttgtggaattgattttggttaaaagtgagtttaatgtaaagtgatttatgt 40352458  T
Q  291 ttagata 297  Q
    || ||||    
T  40352457 ttggata 40352451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 13344938 - 13344838
Alignment:
Q  192 gtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtt 291  Q
    ||||||||||||  ||||||   |||||||||| |  |||||||||||||| ||||||||||||   |||||||||||| |  ||||| |||||||||||    
T  13344938 gtgtgtttggttgggcggtgaagataattgattttgattgaattgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgtt 13344839  T
Q  292 t 292  Q
    |    
T  13344838 t 13344838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Complemental strand, 47085960 - 47085894
Alignment:
Q  231 gaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagat 296  Q
    ||||||||||||  |||||||||||||  |||||||||||| | ||| |||||||||||||||||||    
T  47085960 gaattgattttgatagaattgattttaattaaaagtgagttgaatgtgaattgatttatgtttagat 47085894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 304
Target Start/End: Complemental strand, 29438749 - 29438636
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    ||||||||||  | ||||||||  | ||||||||||  |  ||||||||||||||||||||||||    ||||||||||| | | |||| || |||||||    
T  29438749 tgtgtgtttgaatttgcggtggagagaattgattctgataaaattgattttgcagaattgattttgatgaaaagtgagttcaatataaagtggtttatgt 29438650  T
Q  291 ttagatacctttgc 304  Q
    ||| ||||||||||    
T  29438649 ttatatacctttgc 29438636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 18325315 - 18325382
Alignment:
Q  230 tgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagata 297  Q
    ||||||| ||||| | ||||||||||| ||||||||||||| | |||||| || ||| ||||||||||    
T  18325315 tgaattggttttgtaaaattgattttacataaaagtgagttgaatgtaaaatggtttctgtttagata 18325382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 291
Target Start/End: Original strand, 36447637 - 36447736
Alignment:
Q  192 gtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtt 291  Q
    |||||||||||| || || ||| | |||||||| |  ||||||| |||||| ||||||||||||    ||||||||||| || ||||| |||||||||||    
T  36447637 gtgtgtttggttctgtggcggtgaaaattgattttgattgaattaattttgtagaattgattttgatcaaaagtgagttaagagtaaagtgatttatgtt 36447736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 296
Target Start/End: Original strand, 6953695 - 6953760
Alignment:
Q  231 gaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagat 296  Q
    ||||||||| |||| ||||||||||  |||||||||| |||  |||||| | ||||||||||||||    
T  6953695 gaattgattatgcaaaattgatttttaataaaagtgattttcatgtaaagttatttatgtttagat 6953760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 31223546 - 31223433
Alignment:
Q  186 ttaattgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgat 284  Q
    |||| |||||||||||||  |||||||  | |||||||| || | ||||||| ||||  ||||||||||||   ||||||||||||   ||| |||||||    
T  31223546 ttaagtgtgtgtttggtttggcggtggggagaattgattttaatagaattgagtttgagagaattgattttggttaaaagtgagttggatgtgaattgat 31223447  T
Q  285 ttatgtttagatac 298  Q
    |||||||| |||||    
T  31223446 ttatgtttggatac 31223433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 13056110 - 13056062
Alignment:
Q  244 agaattgattttatataaaagtgagtttagtgtaaattgatttatgttt 292  Q
    ||||||||||||   |||||||||||| ||||| |||||||||||||||    
T  13056110 agaattgattttggttaaaagtgagttgagtgtgaattgatttatgttt 13056062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 20800276 - 20800344
Alignment:
Q  231 gaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||||||||  ||||||||||||   |||||||||||| | ||| ||||||||||||||| |||||    
T  20800276 gaattgattttgagagaattgattttggttaaaagtgagttgaatgtgaattgatttatgtttggatac 20800344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 35569201 - 35569269
Alignment:
Q  231 gaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||||||||  ||||||||||||   |||||||||||| | ||| ||||||||||||||| |||||    
T  35569201 gaattgattttgagagaattgattttggttaaaagtgagttgaatgtgaattgatttatgtttggatac 35569269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 43730059 - 43730115
Alignment:
Q  246 aattgattttatataaaagtgagtttagtgtaaattgatttatgtttagataccttt 302  Q
    ||||||||||   |||||||||||| ||||| ||||||||| ||||| |||||||||    
T  43730059 aattgattttggttaaaagtgagttgagtgtcaattgatttgtgtttggataccttt 43730115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 38715194 - 38715269
Alignment:
Q  217 aattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgttt 292  Q
    |||||||| || ||||||||||||||||||||||||||||  ||||| |||||| |||||||| ||||||||||||    
T  38715194 aattgattttaattgaattgattttgcagaattgattttagttaaaattgagttaagtgtaaagtgatttatgttt 38715269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 302
Target Start/End: Complemental strand, 29970951 - 29970841
Alignment:
Q  192 gtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtt 291  Q
    |||||||||| |||||||| || | |||||||| |  | ||||||| |||| | |||||||||||  |||||||||||| ||| |||| |||||||||||    
T  29970951 gtgtgtttggctatgcggtagtaaaaattgattttgatagaattgaatttgtataattgattttagttaaaagtgagttgagtttaaagtgatttatgtt 29970852  T
Q  292 tagataccttt 302  Q
    | |||||||||    
T  29970851 tggataccttt 29970841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 301
Target Start/End: Original strand, 31246273 - 31246384
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatg 289  Q
    ||||||||||||| ||||||||  |||||||||| |    ||||||||||||  ||||||||||||   |||||||||||| | ||| ||||||||||||    
T  31246273 tgtgtgtttggttctgcggtggagataattgattttgacagaattgattttgttagaattgatttttgttaaaagtgagttgaatgtgaattgatttatg 31246372  T
Q  290 tttagatacctt 301  Q
    ||| ||||||||    
T  31246373 tttggatacctt 31246384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 35550371 - 35550270
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatat-aaaagtgagtttagtgtaaattgatttatg 289  Q
    |||||||||| || ||||||||  | |||||||| |  |||||||||||||| | |||||||||| ||| |||||||||||||||||||| |||||| ||    
T  35550371 tgtgtgtttgattttgcggtggcgaaaattgattttgattgaattgattttgtaaaattgatttt-tatcaaaagtgagtttagtgtaaagtgatttttg 35550273  T
Q  290 ttt 292  Q
    |||    
T  35550272 ttt 35550270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 41891779 - 41891884
Alignment:
Q  192 gtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtt 291  Q
    ||||||||||||||||||||  || |||| ||| |  |||||||||||||| |||||||||||||  || ||||||||| ||   |||||||||| ||||    
T  41891779 gtgtgtttggttatgcggtgactaaaattaattttgattgaattgattttgtagaattgattttagttagaagtgagttgagcaaaaattgatttgtgtt 41891878  T
Q  292 tagata 297  Q
    | ||||    
T  41891879 tggata 41891884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 26491043 - 26490972
Alignment:
Q  232 aattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagataccttt 302  Q
    |||||||||||  ||||||||||||   |||||||||||| ||||||||||||||| ||||| |||||||||    
T  26491043 aattgattttggtagaattgattttggttaaaagtgagttgagtgtaaattgatttgtgtttggataccttt 26490972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 38516409 - 38516347
Alignment:
Q  230 tgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgttt 292  Q
    ||||||||||||| ||||||||||||  |||| |||||||| | |||||| ||||||||||||    
T  38516409 tgaattgattttgtagaattgattttcgataatagtgagttgaatgtaaagtgatttatgttt 38516347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 33588829 - 33588760
Alignment:
Q  232 aattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatacctt 301  Q
    ||||||||| | ||||||||||||   |||||||||||||| |||||| | |||||||||| ||||||||    
T  33588829 aattgatttagtagaattgattttgattaaaagtgagtttaatgtaaaattatttatgtttggatacctt 33588760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 41408340 - 41408275
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgatttta 256  Q
    ||||||||||||||| ||||| ||| |||||||| |  ||||||| |||||| |||||||||||||    
T  41408340 tgtgtgtttggttatacggtgattaaaattgattttgattgaattaattttgtagaattgatttta 41408275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 41289070 - 41289124
Alignment:
Q  244 agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    |||||||||||||  |||||||||||| | ||| ||||||||||||||| |||||    
T  41289070 agaattgattttaattaaaagtgagttgattgtgaattgatttatgtttggatac 41289124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 36779500 - 36779435
Alignment:
Q  232 aattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagata 297  Q
    ||||||||||| ||||||||||||   |||||||||||| | |||||| | |||||||||| ||||    
T  36779500 aattgattttgtagaattgattttgattaaaagtgagttgaatgtaaagtaatttatgtttggata 36779435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 20190248 - 20190188
Alignment:
Q  232 aattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgttt 292  Q
    ||||||||||||| ||||||||||   ||||||||||||||   |||| ||||||||||||    
T  20190248 aattgattttgcataattgattttggttaaaagtgagtttaagataaaatgatttatgttt 20190188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 7422 - 7332
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaatt 281  Q
    ||||||||||||| |||||| || |||||||||| |  || |||||||||||||||||||||||||  ||||| ||||| |||||||||||    
T  7422 tgtgtgtttggttttgcggttgtcataattgattttgattaaattgattttgcagaattgattttagttaaaattgagtgtagtgtaaatt 7332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 292
Target Start/End: Complemental strand, 16353589 - 16353489
Alignment:
Q  193 tgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatat-aaaagtgagtttagtgtaaattgatttatgtt 291  Q
    ||||||||||| ||||||||  ||||||||||||  | |||||||||||||||||||||||||  || ||||||||||||| | |||| || ||||||||    
T  16353589 tgtgtttggttctgcggtggagataattgattctgatagaattgattttgcagaattgatttttgatgaaaagtgagtttaatctaaagtggtttatgtt 16353490  T
Q  292 t 292  Q
    |    
T  16353489 t 16353489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 4228707 - 4228599
Alignment:
Q  194 gtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgttta 293  Q
    ||||||||||| |||||    |||||||||| | |||||||||||||| || ||||||||||   |||||||||||| | || ||| ||||||||||||     
T  4228707 gtgtttggttacgcggtaacaataattgattttggttgaattgattttacataattgattttgattaaaagtgagttgaatgaaaagtgatttatgtttg 4228608  T
Q  294 gataccttt 302  Q
    |||||||||    
T  4228607 gataccttt 4228599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 301
Target Start/End: Original strand, 42752136 - 42752247
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatg 289  Q
    ||||||||||||| ||||||||  |||||||||| |    ||||||||||||  ||||||||||||   |||||||||||| | ||| ||||||||||||    
T  42752136 tgtgtgtttggttctgcggtggagataattgattttgacagaattgattttgttagaattgatttttgttaaaagtgagttgaatgtgaattgatttatg 42752235  T
Q  290 tttagatacctt 301  Q
    ||| ||||||||    
T  42752236 tttggatacctt 42752247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 44274760 - 44274700
Alignment:
Q  232 aattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgttt 292  Q
    ||||||||||||| ||||||||||   ||||||||||||||   |||| ||||||||||||    
T  44274760 aattgattttgcataattgattttggttaaaagtgagtttaagataaaatgatttatgttt 44274700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 219795 - 219684
Alignment:
Q  191 tgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgt 290  Q
    |||||||||||||| ||||||   |||||||||| | |||||||||||||| || || | |||||   |||||||||||| | || ||| ||||||||||    
T  219795 tgtgtgtttggttacgcggtgaaaataattgattttggttgaattgattttacataactaattttgattaaaagtgagttgaatgaaaagtgatttatgt 219696  T
Q  291 ttagataccttt 302  Q
    || |||| ||||    
T  219695 ttggatatcttt 219684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 292
Target Start/End: Original strand, 3605704 - 3605811
Alignment:
Q  185 tttaattgtgtgtttggttatgcggtggttataattgattctagttgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgat 284  Q
    ||||| ||||||||||||| || |||||  | |||||||| |  |  ||||||||||| ||||||||||||   |||||||||||| |||| ||| ||||    
T  3605704 tttaagtgtgtgtttggttgtgtggtggacaaaattgattttgatataattgattttgtagaattgattttgattaaaagtgagttgagtgaaaagtgat 3605803  T
Q  285 ttatgttt 292  Q
    ||||||||    
T  3605804 ttatgttt 3605811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 1500059 - 1499997
Alignment:
Q  230 tgaattgattttgcagaattgattttatataaaagtgagtttagtgtaaattgatttatgttt 292  Q
    ||||||||||||| | ||||||||||   |||||| ||||| |||||||||||||||||||||    
T  1500059 tgaattgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgttt 1499997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 5584047 - 5584113
Alignment:
Q  231 gaattgattttg-cagaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagata 297  Q
    |||||||||||| |||||||||||||   |||||||||||||| ||| ||||||||||||||| ||||    
T  5584047 gaattgattttgacagaattgattttgactaaaagtgagtttaatgt-aattgatttatgtttggata 5584113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 16121974 - 16122071
Alignment:
Q  206 gcggtggttataattgattctagttgaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagataccttt 302  Q
    ||||||||||||||||||| |  |  |||||||||||  ||||||||||||   ||||||||| || ||||||| ||||||| |||||  ||||||||    
T  16121974 gcggtggttataattgattttgataaaattgattttgatagaattgattttggttaaaagtgatttgagtgtaagttgatttgtgtttgaataccttt 16122071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 16442348 - 16442416
Alignment:
Q  231 gaattgattttgc-agaattgattttatataaaagtgagtttagtgtaaattgatttatgtttagatac 298  Q
    ||||||||||||  |||||||||||||  || ||||||||| | ||| ||||||||||||||| |||||    
T  16442348 gaattgattttgagagaattgattttagttacaagtgagttgaatgtgaattgatttatgtttggatac 16442416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University